Glyma05g29250 - SoyBase

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Report for Sequence Feature Glyma05g29250

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34907156
stop:	34912747
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45760	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:18561121-18563005 FORWARD LENGTH=360	SoyBase	E_val: 7.00E-157	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0279	KOG	G protein beta subunit-like protein	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF207	Panther	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PR	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7LJG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase n=1 Tax=Medicago truncatula RepID=G7LJG4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K411	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K411_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g29250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g29250

Paralog	Evidence	Comments
Glyma08g12410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g29250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g29250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g29250

Limit To All Plant Sequences

>Glyma05g29250.1   sequence type=CDS   gene model=Glyma05g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGAAGGATGCGACGAAGCTTAAGCTGAAGCCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTCATCGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACTTGCGATGCCCTGATGAGCCGAGACTGGTTATGGATGTTAGCGTGGAGCCAGTTTCCTCCCTTTGTTTCAAGTCAGGGATGGAAGATATGATTTATGTCTCCTCAGGAAAGGAAATCAAGTGTTTTGATGTGCGATTGGCTGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAAGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTCTTGCTGCAGCAGATGATAATGGCGAGGTGAAGATAATTGACATTCATCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCCTGGGAAGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTATTCCAGAAGTCGACATGCTAGATAAATTAGACAAAATATGTGCTGTTGCAAGGGGAGATGGAGCTATTGATGTGATTAATATAGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGATGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGGATTACACTTTGGGTGGTCACACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGGTATGGAATTTGTCCTGTTATCCAGATGCTGGGTTAAGTGACGACAACAACAACAATATCCTACATTTGAACATTGAAGTACCTCGAAAAGTCAATTGGCTGTGTACCACCTCAGCTGATACAGACAACCTTGTTGTGTGTGACACATCTAAAGTAGTAAAGGTCTACTCTATAACATAG

Predicted protein sequences of Glyma05g29250

Limit To All Plant Sequences

>Glyma05g29250.1   sequence type=predicted peptide   gene model=Glyma05g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKDATKLKLKPRRLKGHDDSTTCCIASRERSHLIVTSGDDGRVCWFDLRCPDEPRLVMDVSVEPVSSLCFKSGMEDMIYVSSGKEIKCFDVRLAAAQWKPLENYNYNKEEINKVVCNSKSSFLAAADDNGEVKIIDIHQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVVDFATFDVSSGIAGRCVNPAFVHAIAIPEVDMLDKLDKICAVARGDGAIDVINIETEMAATKSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLDYTLGGHTAAVSSLAFSLFGERGKFLISGGNDKLVKVWNLSCYPDAGLSDDNNNNILHLNIEVPRKVNWLCTTSADTDNLVVCDTSKVVKVYSIT*

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