SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18780 | AT | Annotation by Michelle Graham. TAIR10: cellulose synthase family protein | chr4:10312846-10316719 REVERSE LENGTH=985 | SoyBase | E_val: 0 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0009834 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010116 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016759 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity | SoyBase | N/A | ISS |
| GO:0016760 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity | SoyBase | N/A | ISS |
| PTHR13301 | Panther | X-BOX TRANSCRIPTION FACTOR-RELATED | JGI | ISS | |
| PTHR13301:SF23 | Panther | JGI | ISS | ||
| PF03552 | PFAM | Cellulose synthase | JGI | ISS | |
| UniRef100_G7LJG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase n=1 Tax=Medicago truncatula RepID=G7LJG4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KSF7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSF7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g29240 not represented in the dataset |
Glyma05g29240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g12400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g160000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g29240.2 sequence type=CDS gene model=Glyma05g29240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGCAATCTAGTGTTCCCCTCTGCAACACTTGTGGGGAACAAGTGGGACTTAATGCAAATGGGGAAGTGTTTGTGGCTTGTCATGAATGCAATTTCCCAATTTGCAAGGATTGCTTTGAGCATGAGATCAATGAGGACCATAGGGTCTGCATGAGGTGTGGCACTCCCCATGAAGAGAGAACAAAGGAGGAGGAGGAGGATTTCCATGAGATAAAGGTTCACGAAAATGAGGATGATGATTTCCATGAGATAAAGGTTCATGAAAATCAATCCACAACACCTTTCCAAATCAATAACTCTCAGGATGTTGGACTCCATGCTAGACATGTCAGTACAGTGTCCACAGTCGATAGTGTGGAAAGCTGGAAGGAAAAGGATAAAAAGAACAAGAAAAAAAAGGCTGCACCCAAGGAAGAAAAGGACGCCTCAATTCCTCCAGAGCAGCAGATGGAAGAAACACGGCCCACAGAGGCTGCTGCTGCTGCACCACTTTCAGTAGTTATTCCAATGTCAAAATCCAAAATTGCACCGTACAGAACTGTGATAATCATGCGACTGATAATATTGGGACTTTTCTTCCATTATCGAGTCACAAACCCTGTTGAAAGTGCTTTTCCTCTTTGGTTGACTTCTATCATCTGTGAGATCTGGTTTGCATTTTCCTGGGTGCTAGATCAGTTCCCTAAATGGAGTCCTATCAATAGGCAAACTTTTATTGACAATCTGTCTGCAAGGTTTGAAAGAGAGGGTGAACCCAATGAACTTGCTGCTGTTGATTTCTTTGTCAGTACAGTGGATCCTTTGAAAGAGCCACCATTGATCACAGCTAATACAGTGCTTTCTATCCTTGCGGTTGACTATCCAGTGGATAAAGTATCCTGTTATGTGTCAGATGATGGTGCTGCAATGCTCACATTTGAATCTCTTGTGGAGACTGCTGACTTTGCAAGGAAGTGGGTGCCATTTTGCAAGAAGTTTTCAATTGAACCAAGAGCACCTGAGTTTTACTTCTCTCAGAAGATTGATTACCTGAAGGACAAGGTGCAACCTTCTTTCGTGAAGGAGCCTAGAGCAATGAGAGACTATGAAGAGTATAAAGTACGAGTTAATGCCATGGTAGCTAAGGCTCAGAAAACACCAGAAGAAGGATGGACTATGCAAGATGGTACACCTTGGCCAGGAAATAACTCACGTGATCACCCTGGCATGATTCAGGTTTTTCTTGGACACACTGGAGCCCGTGACATAGAAGGAAATGAACTTCCCAGGCTGGTTTATGTTTCCAGAGAGAAAAGACCAGGTTACCAACATCACAAGAAAGCTGGTGCTGAAAATGCACTGGTGAGAGTGTCTGCAGTTCTCACAAATGCTCCCTTCATTCTCAATCTTGATTGTGATCATTATGTTAACAACAGCAAGGCCGTTCGGGAAGCAATGTGTTTTCTCATGGATCCTGAAGTTGGTAGAGATGTGTGTTATGTTCAGTTCCCCCAGAGATTTGATGGTATTGATCGCAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGACTTGATGGCATTCAAGGACCAGTATATGTGGGGACTGGATGTGTTTTCAATAGACAAGCACTTTATGGCTATAGCCCTCCTTCTATGCCCAGCTTACCAAGATCTTCATGCTGTTGCTTCCCCTCAAAGAAGTCCACCAATGATGTCTCAGACTTTCAAAGGAATGCAAAGAGGGAAGAACTTGAGGCCGCCATTTTTAATCTCAAGGAACTTGACAATTACGATGAGCATGAGAGGTCAATGCTTATTTCACAAATGAGCTTTGAAAAAACTTTTGGCTTGTCTACTGTTTTCATTGAATCTACACTAATGGAGAATGGAGGAGTGCCTGAAGCTGCAGATCCCTCGATGCTGATCAAGGAGGCCATTCATGTAATTAGCTGTGGATATGAAGAAAAGACTTTATGGGGAAAAGAGATTGGTTGGATTTATGGTTCCGTCACTGAGGATATCTTATCGGGGTTCAAGATGCAATGTCGAGGATGGAAGTCAATTTACTGCATGCCCTTGAGGCCTGCATTCAAAGGGTCTGCACCTATCAACTTGTCTGATAGATTGCACCAAGTCCTTCGATGGGCCCTTGGATCAATTGAAATTTTCTTAAGTAGGCACTGCCCCCTCTGGTATGGATTTTCTGGAGGCCGTCTCAAATGGCTACAAAGAATGGCTTATATAAACACCATTGTCTACCCTTTCACATCCCTTCCTCTCGTTGCTTACTGTTCTCTGCCTGCAATTTGCCTCCTCACAGGAAAATTTATCATACCAACGCTTTCCAACGTTGCAAGTGTTCTCTTTCTTGGACTTTTCCTCTCAATTATAATAACCAGTGTGCTCGAGCTGCGATGGAGTGGGGTTAGTATAGAAGATTTGTGGCGTAATGAGCAGTTCTGGGTTATTGGAGGTGTTTCAGCCCATCTGTTTGCCGTGTTCCAAGGACTTCTTAAGATGTTGGCTGGTGTTGACACCAACTTCACCTGGACTACTCTCTTGATTCCTCCAACAACTCTTATCATTGTTAACATGGTTGGTGTTGTTGCTGGATTCTCTGATGCACTTAATGGAGGGTATGAGTCTTGGGGACCCCTCTTTGGGAAAGTGTTCTTTGCTTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGCACGCCGACCATTGTTGTTCTCTGGTCAGTGTTGTTGGCCTCTGTCTTCTCTCTTGTTTGGGTCAAAATAAATCCATTCGTGAACACAGTTGACAGTGAAACCATCGCCGAGACCTGCATTGCCATAGATTGTTAA
>Glyma05g29240.2 sequence type=predicted peptide gene model=Glyma05g29240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVQSSVPLCNTCGEQVGLNANGEVFVACHECNFPICKDCFEHEINEDHRVCMRCGTPHEERTKEEEEDFHEIKVHENEDDDFHEIKVHENQSTTPFQINNSQDVGLHARHVSTVSTVDSVESWKEKDKKNKKKKAAPKEEKDASIPPEQQMEETRPTEAAAAAPLSVVIPMSKSKIAPYRTVIIMRLIILGLFFHYRVTNPVESAFPLWLTSIICEIWFAFSWVLDQFPKWSPINRQTFIDNLSARFEREGEPNELAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKEPRAMRDYEEYKVRVNAMVAKAQKTPEEGWTMQDGTPWPGNNSRDHPGMIQVFLGHTGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPEVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYSPPSMPSLPRSSCCCFPSKKSTNDVSDFQRNAKREELEAAIFNLKELDNYDEHERSMLISQMSFEKTFGLSTVFIESTLMENGGVPEAADPSMLIKEAIHVISCGYEEKTLWGKEIGWIYGSVTEDILSGFKMQCRGWKSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYGFSGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNVASVLFLGLFLSIIITSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKMLAGVDTNFTWTTLLIPPTTLIIVNMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNTVDSETIAETCIAIDC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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