SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18760 | AT | Annotation by Michelle Graham. TAIR10: receptor like protein 51 | chr4:10308163-10309458 REVERSE LENGTH=431 | SoyBase | E_val: 6.00E-88 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| KOG4579 | KOG | Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF497 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_G7LJG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7LJG3_MEDTR | SoyBase | E_val: 3.00E-104 | ISS |
| UniRef100_UPI0002339F53 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339F53 related cluster n=1 Tax=unknown RepID=UPI0002339F53 | SoyBase | E_val: 3.00E-175 | ISS |
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Glyma05g29230 not represented in the dataset |
Glyma05g29230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g159900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g29230.1 sequence type=CDS gene model=Glyma05g29230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAATCATCTCCCACGCCAACCTCACCTGCTCTCTCCCCATACACCTCCATTCCCCCAACCTCACCTACCTCGACCTCTCTTTCAACAACCTTAAAGGCAACATACCCCCGTCCATCACCATGTTGGAAAATCTCCAAGTTTTAAATCTCTCTTCCAATGGCCTCAAGGGTGAGATACCCTCTTCCATTGGAGACTTGATTTCCCTCAAAAACCTCTCCTTGGCTTTCAATTCGTTCTCGGGCGATGTCCCTGATTCGTTATCTGCCATACCCGGTTTGCTTCACTTGGATCTCAGCTCCAACCAGCTCAACGGGACTATTCCCACGTTCATTTCCGAAATGAGGAACCTCAAACACTTGAACCTCGCCAACAACCTCCTTCATGGGGTTGTGCCTTTCAACTCAAGTTTTATCGACAAGTTGGAGGTGTTGAAGGTGGGTGGGAATGGGAACTTGTGTTATAACCGTTCCGTTTTGTCTTCCAAGTTTATCATGAAGCTTGAGATTGCTCCTTGTGATAAGTTTGGGAGGCCGGTGTCTCCTCCACCTTCGAAGCGTTCTAATTCTGCGGATGATGGCAGTGATGGAGATTATGATTATGATGATGGTGATGGTGGTGGTGGTGGTGGCAGTGTCCGTCACATGAAGGAGCATCATCATGGGCCCAACAAGGTGGTTCTTGGTGTGGCCATAGCGCTTTCTTCCATTGTCTTTCTCGTTGTTTTCCTAATACTGTGCTCCAAGTGCTGTCGCTGA
>Glyma05g29230.1 sequence type=predicted peptide gene model=Glyma05g29230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LIISHANLTCSLPIHLHSPNLTYLDLSFNNLKGNIPPSITMLENLQVLNLSSNGLKGEIPSSIGDLISLKNLSLAFNSFSGDVPDSLSAIPGLLHLDLSSNQLNGTIPTFISEMRNLKHLNLANNLLHGVVPFNSSFIDKLEVLKVGGNGNLCYNRSVLSSKFIMKLEIAPCDKFGRPVSPPPSKRSNSADDGSDGDYDYDDGDGGGGGGSVRHMKEHHHGPNKVVLGVAIALSSIVFLVVFLILCSKCCR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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