Glyma05g29150 - SoyBase

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Report for Sequence Feature Glyma05g29150

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34814895
stop:	34820567
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18640	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr4:10260481-10263577 FORWARD LENGTH=678	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0048589	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental growth	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF810	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G7LJE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7LJE3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3Z9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3Z9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g29150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g29150

Paralog	Evidence	Comments
Glyma08g12305	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g29150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g158800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g29150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g29150

Limit To All Plant Sequences

>Glyma05g29150.3   sequence type=CDS   gene model=Glyma05g29150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCATATGGGGGCCATTTGGATTATGGCTCCGAATTTATGTTGGATTGATTTCTCTGTGGGGAACTCGACAGTGTTGGTCTCTGAACGATGAAGGATTAACCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTGCTGCTCTGGCAAATTGGAATCCAAACGATTGCAACCCTTGCAAATGGCTGGGTGTACGTTGTGTTGATAGTCAAGTGCAAACGCTGGTCCTACCTGATCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTCGTCATCTAAAATCCCTTGTACTATACAAGAACAGTTTTTCTGGTACCATTCCCAAAGAACTTGGAGGTCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATGACTTGACTGGATGTATCCCAGCAGAAATTGTCAGGGTGTTGTTGTCAAAACATTTGTTGGTTTGTGACAATAAATTTGAAGGCAGTGATTCTCAAGAGCTCAGATTGCCCTCTCATAACAATCATTTAACTCCTTTGGCAACTTTATCTCATGGCAAGAATAGAAAGTTTGCACACCGGTTCAAGCTAGGAAAGGCTACTCCTCATGCCTATGAAGAGAAATACTGTAAAAATCTGACTAATTTTGGCCATGATGAGTCAGAGTTTGGCCAGAATGTACCAAATATAATCAATTCAGTACGACGTAAGTTGTTTGATCAGTCCAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATAGAGATCAGTTCTGTTCCAATTACCCAGAGCAGTGGAGCTTTCCCAGCTGTGCCAGACACCAATAAGAAACAAAATCATCAACAAAATTCACCTAATGGTGCATCTGGAAAATTATGGAAGTATATTATTATAATCGCAGGTGTTGCTGTCTTGGTCATTGTTTTTGTGATCATGCTTTGCATTTGGCGTAAACGAGCAGCAAAAGTAATAAAGCCTTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTCCCCAAATTGAATCAGGGAGAGCTGGAAACAGCCTGTGAAGATTTCAGCAATATTATTAATAGTTTTGATGAGTGCACTATATACAAAGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTACTTCTGCCCGTGATTGGTCAAAGAACATGGAGACAGCCTATCGCAAAAAGATTGCTGCTTTGTCCCGTGTTAACCATAAGAACTTTACCAACCTTATTGGGTACTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCGAATGGAAACTTATTTGAGCATCTGCATGTTAAGGAAGTTGAACCTCTTGACTGGAGCGCAAGGATGAGGGTTATTATGGGCACGGCTTATTGTCTTCAGTATATGCACCATGATCTAAATCCACCAGTAGCTCATTCCAACCTCAATTCAATTGCTATATTATTAACAGATGACTTTGCTGCTAAGATATCAGAGATCTCTTTTGGCAAGCATGCAAAAACCAACACAACTGGAGATGAATCACAGAAATCTTCTGAGTTGCCACCACAGGCTGATCCTGAAACTGATGTCTATAACTTTGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCCACCTTGCCAACTGGGCTGCTGAGCACTTGAATGATAAGCGAAGCATCGGCTATCTGATCGATCCCACGCTGCAGTCCTTCAAAGAGGAAGAACTTGAGGTCATCTGTGAGGTGATCAAAGATTGTCTTCAATCTGATCCAAGGTTAAGACCTACAATGAAGGACATAACTCCCAGATTGAGGGAAGTTCTTCATATATCACCCGAGCAAGCTGTCCCAAGACTCTCTCCACTCTGGTGGGCTGAACTGGAGATCTTATCAATGGAGGCCACTTAA

Predicted protein sequences of Glyma05g29150

Limit To All Plant Sequences

>Glyma05g29150.3   sequence type=predicted peptide   gene model=Glyma05g29150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESIWGPFGLWLRIYVGLISLWGTRQCWSLNDEGLTLLEFRGRITSDPFAALANWNPNDCNPCKWLGVRCVDSQVQTLVLPDLSLEGTLAPELGKLRHLKSLVLYKNSFSGTIPKELGGLDKLELLDLRGNDLTGCIPAEIVRVLLSKHLLVCDNKFEGSDSQELRLPSHNNHLTPLATLSHGKNRKFAHRFKLGKATPHAYEEKYCKNLTNFGHDESEFGQNVPNIINSVRRKLFDQSSNLAAAPFSGGPTIEISSVPITQSSGAFPAVPDTNKKQNHQQNSPNGASGKLWKYIIIIAGVAVLVIVFVIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNQGELETACEDFSNIINSFDECTIYKGTLSSGVEIAVDSTIVTSARDWSKNMETAYRKKIAALSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGNLFEHLHVKEVEPLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSIAILLTDDFAAKISEISFGKHAKTNTTGDESQKSSELPPQADPETDVYNFGVLLLEIISGKLPYSEEQGHLANWAAEHLNDKRSIGYLIDPTLQSFKEEELEVICEVIKDCLQSDPRLRPTMKDITPRLREVLHISPEQAVPRLSPLWWAELEILSMEAT*

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