Glyma05g29100 - SoyBase

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Report for Sequence Feature Glyma05g29100

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34767392
stop:	34775390
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34150	AT	Annotation by Michelle Graham. TAIR10: SCAR family protein \| chr2:14419432-14423259 REVERSE LENGTH=821	SoyBase	E_val: 2.00E-99	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0051127	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of actin nucleation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0031209	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCAR complex	SoyBase	N/A	ISS
GO:0043229	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular organelle	SoyBase	N/A	ISS
GO:0071944	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell periphery	SoyBase	N/A	ISS
GO:0003785	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin monomer binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR12902	Panther	WASP-1	JGI		ISS
UniRef100_G7LIR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SCAR-like protein n=1 Tax=Medicago truncatula RepID=G7LIR6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3Z5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3Z5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g29100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g29100

Paralog	Evidence	Comments
Glyma08g12240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g29100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g158300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g29100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g29100

Limit To All Plant Sequences

>Glyma05g29100.1   sequence type=CDS   gene model=Glyma05g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTGGTGAGGTTGCAGGTGAGGAATGAGTTCGGTTTGGGGCAGCCTGAGTTGTACAGAGAGTCAAACAGAGAGGACCCTAAAGCTGTGTTGGATGGTGTGGCTGTGGCTGGTCTTGTTGGGATCTTGAGGCAACTTGGTGATCTTGCTGATTTTGCAGCAGAGGTTTTTCATGGTCTGCAAGAGCAAGTAATGACAACAGCTTCCAGGAGTCATAGATTGATGGTTCAGGTTCAAAACATTGAAGCTTCACTACCTGCCTTGGAGAAGGCTGTATTGGCACAAACAAGTCACATACATTTAGCTTACACAGCTGGTTGTGAATGGCATCCACGCATGAAAGCTGCTCGAAATCATTTCATTTACAATGACTTGCCTCACTTTATTATGGATTCATATGAAGAATGCCGTGATCCTCCACGGGTACACTTGCTTGATAAATTTGATACTGGTGGCCCAGGATCTTGTTTCAGGAGATATTCAGATCCGACCTTCTTTAAAAGAGTATCTGCAGATTCAGATGAATCTTACTCTGGGAAAACTGAAAAAGCAAGGAAATCTCATAAAAGCAAGAAGAAAAGATCACGAAGGAATGGAGACATTTTAAGGAGTGAACAGAGGCACAGCACTAGTGGAAGAATGCAATCTATTTCTTCTGCTATCAGTGGGCAAACCTCTTCCTCACAAACAGCCTCCACCATAGATATGGCAATGAAATCAGATCTGGAAAATTATTCAAATTCTTTTGATTCAAAATCTGGTGCTGGCTACATTGAATGTGTTTTCCATCCAAGTAATTCTATGCAATCTGATGAGCCAGATTATAAAGAACCATCCTCTACAAGATTGAAACAGAAAGCTGATACTCTGTCATCAGTATCTCATCATATTGATGATAGTATTTCACATGATTCGTTGGAAAAGCAAGTTGCATCTAGTTCATTTGGTGTTACTTGGGATGAAAAGGAAGAGATAGTGGAATCTAAGAGTCAAACATGTGATAGAAATAAAACTCCGGAGAGGCTTAGGTTACATAACCAACATGACTACAATGACTACAATCATATCCTATTTACTGAAGAAAACAACCTGAAACCAGTCCGCAATAGGGCTCAAACTGATGATATTGATAGTGAACCTGATAATTATGTGGATGCTCTCAACACCATTGAATCAGAATCTGAAAATGATATTGATTATATAACAAAACGAGAGGTGCAGCAGTTATCTTCACGTGTCACTTGTGGAATGATTGAAAATGGAGTTAGTGAAGCTCCTCCTAATTTAATGGACAATAATTTATCTGATGTCGTTTTCCAGACTGATTATACTGTTCTCTTAAATGAAGAACAAGGGCATTTAGCTGACTCACTGCAAGAAAATCATGTTCTTGATCTTTTATCAAAGCCAAATGCATCTAATTTGGGATATGTAAGTCCATCTGATGATCTTGATAGAGAAAATATGACCAGAGACACTGCTTCCTTAAACAAAGAACCATTCAGGGATTTGCCTGACTCTCTGCAAGATATTCCTCCTCTCACATCAGAGCCACATGTATCTAATTTGGGACCTGTAAGTCCATCAGATGTTCTTTATAGTGAAGAAATGACCAGAGACACCATTTGCTTCAATAAAGAAATGTTCGGGAATTTGCCTGACTCATTGCAAGAAATTTCTCCTCTCACATCAGAGCCACATGCATCTAATTTGGGACTTGGGAATCCATCAGATGTTCCTTATGGTGAAGAAATGACCAGAGACACTGTTTTCTTCAACAAAGAAACATTTGGGAATTTGCCCAACTTGCAAGAAATTCCTCCTCCCACAGTAGAGCCACATACATCAAATTTGGGACCTGTGAACCCATCAAATTCTCCTCACAGTGAAGAAATGACCACAGATACCGTTTCCTTAAACAAAGAAATGCTTGCGAATTTGCCTAACTCATTGCAAGAAACTCCTGCTCTAACATTAGAGCCGCTTGCATCTAATTTGGCATTTGTGAGTCCATCAGATATTTCTGTTAGCAAAGAAATAGCCAAGAATATAGCTGATTCTCATCCCTCCAAGACTCCTGCCTGTGAGCAGGTTCCTCGCCCAAGTGAAAATTCTGTTTTGGATAACTCAGTATGCACTGACTCCTACATTGGTTCTTCTACTGTTAATGATACAGTGTCAGCACCAATTGAGACTGATATATCATTTTCTGGTTCCAAAAACTCTAATTTACCAGATGAGGAAGCAGGTAAGATCAACAACAATATCTGCAAATCTGAAGAGACTCATAGAGAGTCTTTGGCTGATCATTCAGTTAGGTTCTGGACTAATGGTGGATTATTAGGACTCGAGCCATCAAAACCTCCTGACTTTAACAAGTCAACTTCTCTAGGTCAAGGGTCTTTGAGCACTAAAAGTGAAACAGATGGTGGTTCACATCATAATTCAATGCAAAAGAGCAATGGTTATAAAGAGGAATGGGAATCATCAGAAGAGGTTGCTGAGCAGATTCTAAAGGAACCAAATTCTAGATTCTTAACGTCAGGCCATAATGATGACCAAGCTTGTGTCTCTGAAAAGGCCACTGGCAATTCTCAGCAGAGTAATGGATTTGGTCAGACTGAGAGGGACAATTTAGGGGAAATCAGGGTAATTGCACCTGGAAGTATTCTCCCATCGACCCCTGACACAAAGGACAGTACTGAACCCAACCAGGGAAATGGTGAAAACTCATCGCGTGTGTTTGGACTTAGTCGTAGATTACTAATAAATAGCTTTCAGCGGAAAGTTTCTTTTGATGAAAAATCTGAACATTATAATTCTCTGAAATCTGTTATATTGGACCAGAGTGGACAAAATGGCATTGTAGGACCATCACTTCCTGAGACAACATCCTCCAAAGAGAAAGTTGGTTCTGGATATCCTATAAAGTCACTTCCTCCTTCACCTCCACTTGAACATATGAAAATATCCTTCCATCCTGTCAGTGGACTAGAGACCTCCAAATTAAAACTGAGATTTCCGGATGGCAGTAATCATCATGAAAGCGTAAATGATATGTTTCCTTCTTTCCAGTTGGTTCCTGAAGCTTCTCTTCCTCTGGATGGTTCAGTTTCTCACTCTGATGATGATGACACTTTCTGTAGATCATCTCCATACATATCAGATGATGGTCAAAGCCCTCGCTCTGACTATAATTCTGATCAGTGGGAATCTGATGAGACTCCGGAAAGCAGTGACCAAGGGGTGCATGATTCTCCTTGCAGAAGGTCATCAACTGAATCTGTGTCCAATGATGATACCAATGCAAAAAGTGGACATGGTACATGTACTATGAATGGTGTGGAACATTCTCTGTCCAGGCCTTTACTTGATTTTCCAAGTTACGATAATGTTAATCCTGCACTTGAGAAAGAAAGTAAAAAACATTCCAAATGCAATAATGCTGTTATGTCACATAGTCATGCAGAGCCTGCACAACCACCACCTCCTCCTCCTCTTCCTCCAACGCAATGGCGAGTCTCAAAACCACAGTTGGATATGACAAGTGGGACACAGTATTGTATGTCTGAAGATGCTGAACATATTGGTGATCACAGTCTTCCAGATTCTACTATCCTCCAGCAGCCTAGGGTCACCCAGGTTGAGCAAATACAAATTAATCACGATGATCATGAATCTTATGACAACATTATATATAAATTGAAGGACAAGCTGGATCAGCAGAAGTTGAAGGGTCAGAAGGAAGCAAACCAGTTGAGAATGGGAAAGGAGATAGATGAAAGAGAAGATTTCCTATATCAAATCAGAACAAAAGCATTCAACCTAAGGCCCACAGTATCAGGAAAGTCAAATGATACCACTGGTTCCACAGCAAACGTCAAAGTTACAGCAATTTTGGAGAAGGCAAATGCAATCCGTCAGGTTGTTGCGAGTGATGATGGTGAAGATGATGATAACTGGAGTGATACATGA

Predicted protein sequences of Glyma05g29100

Limit To All Plant Sequences

>Glyma05g29100.1   sequence type=predicted peptide   gene model=Glyma05g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLVRLQVRNEFGLGQPELYRESNREDPKAVLDGVAVAGLVGILRQLGDLADFAAEVFHGLQEQVMTTASRSHRLMVQVQNIEASLPALEKAVLAQTSHIHLAYTAGCEWHPRMKAARNHFIYNDLPHFIMDSYEECRDPPRVHLLDKFDTGGPGSCFRRYSDPTFFKRVSADSDESYSGKTEKARKSHKSKKKRSRRNGDILRSEQRHSTSGRMQSISSAISGQTSSSQTASTIDMAMKSDLENYSNSFDSKSGAGYIECVFHPSNSMQSDEPDYKEPSSTRLKQKADTLSSVSHHIDDSISHDSLEKQVASSSFGVTWDEKEEIVESKSQTCDRNKTPERLRLHNQHDYNDYNHILFTEENNLKPVRNRAQTDDIDSEPDNYVDALNTIESESENDIDYITKREVQQLSSRVTCGMIENGVSEAPPNLMDNNLSDVVFQTDYTVLLNEEQGHLADSLQENHVLDLLSKPNASNLGYVSPSDDLDRENMTRDTASLNKEPFRDLPDSLQDIPPLTSEPHVSNLGPVSPSDVLYSEEMTRDTICFNKEMFGNLPDSLQEISPLTSEPHASNLGLGNPSDVPYGEEMTRDTVFFNKETFGNLPNLQEIPPPTVEPHTSNLGPVNPSNSPHSEEMTTDTVSLNKEMLANLPNSLQETPALTLEPLASNLAFVSPSDISVSKEIAKNIADSHPSKTPACEQVPRPSENSVLDNSVCTDSYIGSSTVNDTVSAPIETDISFSGSKNSNLPDEEAGKINNNICKSEETHRESLADHSVRFWTNGGLLGLEPSKPPDFNKSTSLGQGSLSTKSETDGGSHHNSMQKSNGYKEEWESSEEVAEQILKEPNSRFLTSGHNDDQACVSEKATGNSQQSNGFGQTERDNLGEIRVIAPGSILPSTPDTKDSTEPNQGNGENSSRVFGLSRRLLINSFQRKVSFDEKSEHYNSLKSVILDQSGQNGIVGPSLPETTSSKEKVGSGYPIKSLPPSPPLEHMKISFHPVSGLETSKLKLRFPDGSNHHESVNDMFPSFQLVPEASLPLDGSVSHSDDDDTFCRSSPYISDDGQSPRSDYNSDQWESDETPESSDQGVHDSPCRRSSTESVSNDDTNAKSGHGTCTMNGVEHSLSRPLLDFPSYDNVNPALEKESKKHSKCNNAVMSHSHAEPAQPPPPPPLPPTQWRVSKPQLDMTSGTQYCMSEDAEHIGDHSLPDSTILQQPRVTQVEQIQINHDDHESYDNIIYKLKDKLDQQKLKGQKEANQLRMGKEIDEREDFLYQIRTKAFNLRPTVSGKSNDTTGSTANVKVTAILEKANAIRQVVASDDGEDDDNWSDT*

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