SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34150 | AT | Annotation by Michelle Graham. TAIR10: SCAR family protein | chr2:14419432-14423259 REVERSE LENGTH=821 | SoyBase | E_val: 2.00E-99 | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0051127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of actin nucleation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0031209 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCAR complex | SoyBase | N/A | ISS |
| GO:0043229 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular organelle | SoyBase | N/A | ISS |
| GO:0071944 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell periphery | SoyBase | N/A | ISS |
| GO:0003785 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin monomer binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR12902 | Panther | WASP-1 | JGI | ISS | |
| UniRef100_G7LIR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SCAR-like protein n=1 Tax=Medicago truncatula RepID=G7LIR6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K3Z5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3Z5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g29100 not represented in the dataset |
Glyma05g29100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g12240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g158300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g29100.1 sequence type=CDS gene model=Glyma05g29100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCTGGTGAGGTTGCAGGTGAGGAATGAGTTCGGTTTGGGGCAGCCTGAGTTGTACAGAGAGTCAAACAGAGAGGACCCTAAAGCTGTGTTGGATGGTGTGGCTGTGGCTGGTCTTGTTGGGATCTTGAGGCAACTTGGTGATCTTGCTGATTTTGCAGCAGAGGTTTTTCATGGTCTGCAAGAGCAAGTAATGACAACAGCTTCCAGGAGTCATAGATTGATGGTTCAGGTTCAAAACATTGAAGCTTCACTACCTGCCTTGGAGAAGGCTGTATTGGCACAAACAAGTCACATACATTTAGCTTACACAGCTGGTTGTGAATGGCATCCACGCATGAAAGCTGCTCGAAATCATTTCATTTACAATGACTTGCCTCACTTTATTATGGATTCATATGAAGAATGCCGTGATCCTCCACGGGTACACTTGCTTGATAAATTTGATACTGGTGGCCCAGGATCTTGTTTCAGGAGATATTCAGATCCGACCTTCTTTAAAAGAGTATCTGCAGATTCAGATGAATCTTACTCTGGGAAAACTGAAAAAGCAAGGAAATCTCATAAAAGCAAGAAGAAAAGATCACGAAGGAATGGAGACATTTTAAGGAGTGAACAGAGGCACAGCACTAGTGGAAGAATGCAATCTATTTCTTCTGCTATCAGTGGGCAAACCTCTTCCTCACAAACAGCCTCCACCATAGATATGGCAATGAAATCAGATCTGGAAAATTATTCAAATTCTTTTGATTCAAAATCTGGTGCTGGCTACATTGAATGTGTTTTCCATCCAAGTAATTCTATGCAATCTGATGAGCCAGATTATAAAGAACCATCCTCTACAAGATTGAAACAGAAAGCTGATACTCTGTCATCAGTATCTCATCATATTGATGATAGTATTTCACATGATTCGTTGGAAAAGCAAGTTGCATCTAGTTCATTTGGTGTTACTTGGGATGAAAAGGAAGAGATAGTGGAATCTAAGAGTCAAACATGTGATAGAAATAAAACTCCGGAGAGGCTTAGGTTACATAACCAACATGACTACAATGACTACAATCATATCCTATTTACTGAAGAAAACAACCTGAAACCAGTCCGCAATAGGGCTCAAACTGATGATATTGATAGTGAACCTGATAATTATGTGGATGCTCTCAACACCATTGAATCAGAATCTGAAAATGATATTGATTATATAACAAAACGAGAGGTGCAGCAGTTATCTTCACGTGTCACTTGTGGAATGATTGAAAATGGAGTTAGTGAAGCTCCTCCTAATTTAATGGACAATAATTTATCTGATGTCGTTTTCCAGACTGATTATACTGTTCTCTTAAATGAAGAACAAGGGCATTTAGCTGACTCACTGCAAGAAAATCATGTTCTTGATCTTTTATCAAAGCCAAATGCATCTAATTTGGGATATGTAAGTCCATCTGATGATCTTGATAGAGAAAATATGACCAGAGACACTGCTTCCTTAAACAAAGAACCATTCAGGGATTTGCCTGACTCTCTGCAAGATATTCCTCCTCTCACATCAGAGCCACATGTATCTAATTTGGGACCTGTAAGTCCATCAGATGTTCTTTATAGTGAAGAAATGACCAGAGACACCATTTGCTTCAATAAAGAAATGTTCGGGAATTTGCCTGACTCATTGCAAGAAATTTCTCCTCTCACATCAGAGCCACATGCATCTAATTTGGGACTTGGGAATCCATCAGATGTTCCTTATGGTGAAGAAATGACCAGAGACACTGTTTTCTTCAACAAAGAAACATTTGGGAATTTGCCCAACTTGCAAGAAATTCCTCCTCCCACAGTAGAGCCACATACATCAAATTTGGGACCTGTGAACCCATCAAATTCTCCTCACAGTGAAGAAATGACCACAGATACCGTTTCCTTAAACAAAGAAATGCTTGCGAATTTGCCTAACTCATTGCAAGAAACTCCTGCTCTAACATTAGAGCCGCTTGCATCTAATTTGGCATTTGTGAGTCCATCAGATATTTCTGTTAGCAAAGAAATAGCCAAGAATATAGCTGATTCTCATCCCTCCAAGACTCCTGCCTGTGAGCAGGTTCCTCGCCCAAGTGAAAATTCTGTTTTGGATAACTCAGTATGCACTGACTCCTACATTGGTTCTTCTACTGTTAATGATACAGTGTCAGCACCAATTGAGACTGATATATCATTTTCTGGTTCCAAAAACTCTAATTTACCAGATGAGGAAGCAGGTAAGATCAACAACAATATCTGCAAATCTGAAGAGACTCATAGAGAGTCTTTGGCTGATCATTCAGTTAGGTTCTGGACTAATGGTGGATTATTAGGACTCGAGCCATCAAAACCTCCTGACTTTAACAAGTCAACTTCTCTAGGTCAAGGGTCTTTGAGCACTAAAAGTGAAACAGATGGTGGTTCACATCATAATTCAATGCAAAAGAGCAATGGTTATAAAGAGGAATGGGAATCATCAGAAGAGGTTGCTGAGCAGATTCTAAAGGAACCAAATTCTAGATTCTTAACGTCAGGCCATAATGATGACCAAGCTTGTGTCTCTGAAAAGGCCACTGGCAATTCTCAGCAGAGTAATGGATTTGGTCAGACTGAGAGGGACAATTTAGGGGAAATCAGGGTAATTGCACCTGGAAGTATTCTCCCATCGACCCCTGACACAAAGGACAGTACTGAACCCAACCAGGGAAATGGTGAAAACTCATCGCGTGTGTTTGGACTTAGTCGTAGATTACTAATAAATAGCTTTCAGCGGAAAGTTTCTTTTGATGAAAAATCTGAACATTATAATTCTCTGAAATCTGTTATATTGGACCAGAGTGGACAAAATGGCATTGTAGGACCATCACTTCCTGAGACAACATCCTCCAAAGAGAAAGTTGGTTCTGGATATCCTATAAAGTCACTTCCTCCTTCACCTCCACTTGAACATATGAAAATATCCTTCCATCCTGTCAGTGGACTAGAGACCTCCAAATTAAAACTGAGATTTCCGGATGGCAGTAATCATCATGAAAGCGTAAATGATATGTTTCCTTCTTTCCAGTTGGTTCCTGAAGCTTCTCTTCCTCTGGATGGTTCAGTTTCTCACTCTGATGATGATGACACTTTCTGTAGATCATCTCCATACATATCAGATGATGGTCAAAGCCCTCGCTCTGACTATAATTCTGATCAGTGGGAATCTGATGAGACTCCGGAAAGCAGTGACCAAGGGGTGCATGATTCTCCTTGCAGAAGGTCATCAACTGAATCTGTGTCCAATGATGATACCAATGCAAAAAGTGGACATGGTACATGTACTATGAATGGTGTGGAACATTCTCTGTCCAGGCCTTTACTTGATTTTCCAAGTTACGATAATGTTAATCCTGCACTTGAGAAAGAAAGTAAAAAACATTCCAAATGCAATAATGCTGTTATGTCACATAGTCATGCAGAGCCTGCACAACCACCACCTCCTCCTCCTCTTCCTCCAACGCAATGGCGAGTCTCAAAACCACAGTTGGATATGACAAGTGGGACACAGTATTGTATGTCTGAAGATGCTGAACATATTGGTGATCACAGTCTTCCAGATTCTACTATCCTCCAGCAGCCTAGGGTCACCCAGGTTGAGCAAATACAAATTAATCACGATGATCATGAATCTTATGACAACATTATATATAAATTGAAGGACAAGCTGGATCAGCAGAAGTTGAAGGGTCAGAAGGAAGCAAACCAGTTGAGAATGGGAAAGGAGATAGATGAAAGAGAAGATTTCCTATATCAAATCAGAACAAAAGCATTCAACCTAAGGCCCACAGTATCAGGAAAGTCAAATGATACCACTGGTTCCACAGCAAACGTCAAAGTTACAGCAATTTTGGAGAAGGCAAATGCAATCCGTCAGGTTGTTGCGAGTGATGATGGTGAAGATGATGATAACTGGAGTGATACATGA
>Glyma05g29100.1 sequence type=predicted peptide gene model=Glyma05g29100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPLVRLQVRNEFGLGQPELYRESNREDPKAVLDGVAVAGLVGILRQLGDLADFAAEVFHGLQEQVMTTASRSHRLMVQVQNIEASLPALEKAVLAQTSHIHLAYTAGCEWHPRMKAARNHFIYNDLPHFIMDSYEECRDPPRVHLLDKFDTGGPGSCFRRYSDPTFFKRVSADSDESYSGKTEKARKSHKSKKKRSRRNGDILRSEQRHSTSGRMQSISSAISGQTSSSQTASTIDMAMKSDLENYSNSFDSKSGAGYIECVFHPSNSMQSDEPDYKEPSSTRLKQKADTLSSVSHHIDDSISHDSLEKQVASSSFGVTWDEKEEIVESKSQTCDRNKTPERLRLHNQHDYNDYNHILFTEENNLKPVRNRAQTDDIDSEPDNYVDALNTIESESENDIDYITKREVQQLSSRVTCGMIENGVSEAPPNLMDNNLSDVVFQTDYTVLLNEEQGHLADSLQENHVLDLLSKPNASNLGYVSPSDDLDRENMTRDTASLNKEPFRDLPDSLQDIPPLTSEPHVSNLGPVSPSDVLYSEEMTRDTICFNKEMFGNLPDSLQEISPLTSEPHASNLGLGNPSDVPYGEEMTRDTVFFNKETFGNLPNLQEIPPPTVEPHTSNLGPVNPSNSPHSEEMTTDTVSLNKEMLANLPNSLQETPALTLEPLASNLAFVSPSDISVSKEIAKNIADSHPSKTPACEQVPRPSENSVLDNSVCTDSYIGSSTVNDTVSAPIETDISFSGSKNSNLPDEEAGKINNNICKSEETHRESLADHSVRFWTNGGLLGLEPSKPPDFNKSTSLGQGSLSTKSETDGGSHHNSMQKSNGYKEEWESSEEVAEQILKEPNSRFLTSGHNDDQACVSEKATGNSQQSNGFGQTERDNLGEIRVIAPGSILPSTPDTKDSTEPNQGNGENSSRVFGLSRRLLINSFQRKVSFDEKSEHYNSLKSVILDQSGQNGIVGPSLPETTSSKEKVGSGYPIKSLPPSPPLEHMKISFHPVSGLETSKLKLRFPDGSNHHESVNDMFPSFQLVPEASLPLDGSVSHSDDDDTFCRSSPYISDDGQSPRSDYNSDQWESDETPESSDQGVHDSPCRRSSTESVSNDDTNAKSGHGTCTMNGVEHSLSRPLLDFPSYDNVNPALEKESKKHSKCNNAVMSHSHAEPAQPPPPPPLPPTQWRVSKPQLDMTSGTQYCMSEDAEHIGDHSLPDSTILQQPRVTQVEQIQINHDDHESYDNIIYKLKDKLDQQKLKGQKEANQLRMGKEIDEREDFLYQIRTKAFNLRPTVSGKSNDTTGSTANVKVTAILEKANAIRQVVASDDGEDDDNWSDT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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