SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma05g29060): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma05g29060): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma05g29060

Feature Type:gene_model
Chromosome:Gm05
Start:34737664
stop:34739667
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g29060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G06330AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr1:1931671-1932266 REVERSE LENGTH=159 SoyBaseE_val: 4.00E-52ISS
GO:0006825GO-bp Annotation by Michelle Graham. GO Biological Process: copper ion transport SoyBaseN/AISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG1603 KOG Copper chaperone JGI ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF15Panther COPPER TRANSPORT PROTEIN ATOX1 (METAL TRANSPORT PROTEIN ATX1) JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_B9RWQ4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Copper transport protein atox1, putative n=1 Tax=Ricinus communis RepID=B9RWQ4_RICCO SoyBaseE_val: 2.00E-61ISS
UniRef100_I1K3Y5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K3Y5_SOYBN SoyBaseE_val: 6.00E-97ISS

Expression Patterns of Glyma05g29060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g29060 not represented in the dataset
Glyma05g29060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g29060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g157900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g29060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g29060
>Glyma05g29060.1   sequence type=CDS   gene model=Glyma05g29060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGATAGTAGAGATGTGTGTGCACATGGACTGTCCAGGTTGCGAGACCAAGATAAAGAAAGCTCTCAAAAAATTACGTGGAGTTGATGATGTTGATATAGACATGAGGATGCAAAAGGTAACTGTGATGGGTTGGGCAGACCAAAAGAAGGTATTGAAAACAGTGAGGAAGACTGGTAGGAGGGCAGAACTGTGGCCATATCCATACAACCCAGAATACCATGCCTTGGCTCGCCATTACGGCAATGGTAATTACTTTGCTTCTGCCAAGCCCTCCTCTTCTTACAATTATTACAAGCATGGCTATAGTTATGGTGAAGACTTTGGCTACTACCACAAGCCAATTGGTGCAGCAATTATTGATGAGAAGGCCATGTCCATGTTCAGTGATGACAACCCTCATGCTTGCTCTATAATGTGA
Predicted protein sequences of Glyma05g29060
>Glyma05g29060.1   sequence type=predicted peptide   gene model=Glyma05g29060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIVEMCVHMDCPGCETKIKKALKKLRGVDDVDIDMRMQKVTVMGWADQKKVLKTVRKTGRRAELWPYPYNPEYHALARHYGNGNYFASAKPSSSYNYYKHGYSYGEDFGYYHKPIGAAIIDEKAMSMFSDDNPHACSIM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo