Glyma05g29050 - SoyBase

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Report for Sequence Feature Glyma05g29050

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34730420
stop:	34735518
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19760	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr5:6679591-6681845 REVERSE LENGTH=298	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006835	GO-bp	Annotation by Michelle Graham. GO Biological Process: dicarboxylic acid transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0009060	GO-bp	Annotation by Michelle Graham. GO Biological Process: aerobic respiration	SoyBase	N/A	ISS
GO:0035674	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid transmembrane transport	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0005310	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dicarboxylic acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015142	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tricarboxylic acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0017077	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidative phosphorylation uncoupler activity	SoyBase	N/A	ISS
KOG0759	KOG	Mitochondrial oxoglutarate/malate carrier proteins	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF78	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7LIP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial 2-oxoglutarate/malate carrier protein n=1 Tax=Medicago truncatula RepID=G7LIP6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3Y3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K3Y3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g29050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g29050 not represented in the dataset	Glyma05g29050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g29050

Paralog	Evidence	Comments
Glyma08g12200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g29050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g157800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g29050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g29050

Limit To All Plant Sequences

>Glyma05g29050.2   sequence type=transcript   gene model=Glyma05g29050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATCAAAATGTTGTTCTCTCATTTTGTTGTGGGAGGGAGAGAGCCTACGAATAACAACAACAACAACAACATATGCGAGCTTTACAATATATAAATGCGCTTCTAACTTCTAAATAGTGTGTGTGGTCTCTCTCTATACTATAGGTCTCGCCCAATACCTACTCTCCGCTCCCAAGAGCACGCACCACCACTATTGCACTTCTTCCTCGTTCTCCCTCTTTTTCTTCTTCTTCGCTAAACCCTTTTTTCTATCTCACTAACACAACAATGGGAGACGAGAAGAAGGGCAAGCCTGCTGCTTCCGGCGTGTGGTCCACCATCAAGCCTTTCGTCAATGGTGGAGCCTCCGGCATGCTCGCCACCTGCGTCATTCAACCCATCGATATGATCAAGGTGACGTCAAGTTTTCACCTTTCCGTCCTTTTTTTTGTATCTTTTCCTCCAAATGGACTTCTGGGTCTGTTCGATTTTTGTTGCTGGATTCAGATCTGTGGGTTTTTGTGTACGATTTCTGTTTTTGTGTGTTGTGGGGTTTGATGGTTTTGGTGGTGTAGGTGAGGATTCAACTTGGGCAAGGATCAGCTGCGCAGGTCACTTCCACCATGCTTAAGAATGAGGGTTTTGCTGCCTTCTATAAGGGTCTATCTGCTGGATTACTCAGGCAGGCTACATACACCACTGCCCGTCTTGGGTCATTTAAAATCTTGACGGCCAAAGCTATTGAGGCTAATGATGGGAAGCCCCTGCCACTGTATCAGAAAGCTCTATGTGGGCTGACTGCTGGTGCTATCGGAGCAACTGTTGGTAGTCCAGCAGATTTGGCACTCATTCGGATGCAGGCTGATGCAACATTACCTGCTGCTCAGCGCCGAAATTACACTAATGCCTTCCATGCACTCTATCGAATTACTGCTGATGAAGGGGTTTTGGCGCTTTGGAAAGGTGCTGGGCCTACTGTTGTTAGAGCCATGGCATTGAACATGGGCATGCTTGCATCTTATGATCAAAGTGTTGAGTTCTTCAGGGATTCTGTTGGTCTTGGTGAAGCTGCTACTGTTCTAGGTGCAAGTTCCGTTTCTGGATTTTTCGCAGCAGCTTGCAGTTTGCCATTTGACTATGTGAAGACCCAGATCCAGAAGATGCAACCTGATGCTGATGGAAAATATCCATACACTGGCTCTGTTGATTGTGCTGTCAAAACCTTCAAAGCAGGTGGACCGTTCAAATTTTACACTGGATTCCCTGTCTATTGTGTTAGGATTGCTCCTCATGTCATGATGACATGGATTTTCCTCAACCAGGTTCAGAAATTGCAGAAATCCTACGGGTTGTAGTTCCCCGTGGTAATTTGAACATTTTGTGTTGAATTCAAGCTTTGAGCATATTGAATAATTTGTTGGGTGTAGTTCCCTTTTTGGCAGCTAAACACCAATGGAGCTGATCATTTTTAAGTTTAATTAATCATGCGACTGAAGCAGGAATTTGCATACAAACATTGTATTAGTGATATAATATAGAATTGGATGCGGCTGGAGCAGAATAGTATAATTCCATTTTAGCATGGATGTCATTGAGAAACTTGTGGAGATGTCCAAAACTAGAATAAGTAATCCTATCTCAGACAGCATTCCGACATCAAGTTTTGTAATTTCTTTCCATATGTGGGAAGTATTTTTTTCAACCATATTATTTCTTATTGAGCAGTGATACACGTACCCCACCCAACACCTGAAATATTAAACGGGTGTAGTTGAAATAATAAAATAATATATTTAAAGGGGTGGCTAATTGAGGTATAAACACTGTTTGGGTGTTTGTG

Coding sequences of Glyma05g29050

Limit To All Plant Sequences

>Glyma05g29050.1   sequence type=CDS   gene model=Glyma05g29050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGACGAGAAGAAGGGCAAGCCTGCTGCTTCCGGCGTGTGGTCCACCATCAAGCCTTTCGTCAATGGTGGAGCCTCCGGCATGCTCGCCACCTGCGTCATTCAACCCATCGATATGATCAAGGTGAGGATTCAACTTGGGCAAGGATCAGCTGCGCAGGTCACTTCCACCATGCTTAAGAATGAGGGTTTTGCTGCCTTCTATAAGGGTCTATCTGCTGGATTACTCAGGCAGGCTACATACACCACTGCCCGTCTTGGGTCATTTAAAATCTTGACGGCCAAAGCTATTGAGGCTAATGATGGGAAGCCCCTGCCACTGTATCAGAAAGCTCTATGTGGGCTGACTGCTGGTGCTATCGGAGCAACTGTTGGTAGTCCAGCAGATTTGGCACTCATTCGGATGCAGGCTGATGCAACATTACCTGCTGCTCAGCGCCGAAATTACACTAATGCCTTCCATGCACTCTATCGAATTACTGCTGATGAAGGGGTTTTGGCGCTTTGGAAAGGTGCTGGGCCTACTGTTGTTAGAGCCATGGCATTGAACATGGGCATGCTTGCATCTTATGATCAAAGTGTTGAGTTCTTCAGGGATTCTGTTGGTCTTGGTGAAGCTGCTACTGTTCTAGGTGCAAGTTCCGTTTCTGGATTTTTCGCAGCAGCTTGCAGTTTGCCATTTGACTATGTGAAGACCCAGATCCAGAAGATGCAACCTGATGCTGATGGAAAATATCCATACACTGGCTCTGTTGATTGTGCTGTCAAAACCTTCAAAGCAGGTGGACCGTTCAAATTTTACACTGGATTCCCTGTCTATTGTGTTAGGATTGCTCCTCATGTCATGATGACATGGATTTTCCTCAACCAGGTTCAGAAATTGCAGAAATCCTACGGGTTGTAG

>Glyma05g29050.2   sequence type=CDS   gene model=Glyma05g29050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAAGAATGAGGGTTTTGCTGCCTTCTATAAGGGTCTATCTGCTGGATTACTCAGGCAGGCTACATACACCACTGCCCGTCTTGGGTCATTTAAAATCTTGACGGCCAAAGCTATTGAGGCTAATGATGGGAAGCCCCTGCCACTGTATCAGAAAGCTCTATGTGGGCTGACTGCTGGTGCTATCGGAGCAACTGTTGGTAGTCCAGCAGATTTGGCACTCATTCGGATGCAGGCTGATGCAACATTACCTGCTGCTCAGCGCCGAAATTACACTAATGCCTTCCATGCACTCTATCGAATTACTGCTGATGAAGGGGTTTTGGCGCTTTGGAAAGGTGCTGGGCCTACTGTTGTTAGAGCCATGGCATTGAACATGGGCATGCTTGCATCTTATGATCAAAGTGTTGAGTTCTTCAGGGATTCTGTTGGTCTTGGTGAAGCTGCTACTGTTCTAGGTGCAAGTTCCGTTTCTGGATTTTTCGCAGCAGCTTGCAGTTTGCCATTTGACTATGTGAAGACCCAGATCCAGAAGATGCAACCTGATGCTGATGGAAAATATCCATACACTGGCTCTGTTGATTGTGCTGTCAAAACCTTCAAAGCAGGTGGACCGTTCAAATTTTACACTGGATTCCCTGTCTATTGTGTTAGGATTGCTCCTCATGTCATGATGACATGGATTTTCCTCAACCAGGTTCAGAAATTGCAGAAATCCTACGGGTTGTAG

Predicted protein sequences of Glyma05g29050

Limit To All Plant Sequences

>Glyma05g29050.1   sequence type=predicted peptide   gene model=Glyma05g29050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDEKKGKPAASGVWSTIKPFVNGGASGMLATCVIQPIDMIKVRIQLGQGSAAQVTSTMLKNEGFAAFYKGLSAGLLRQATYTTARLGSFKILTAKAIEANDGKPLPLYQKALCGLTAGAIGATVGSPADLALIRMQADATLPAAQRRNYTNAFHALYRITADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDSVGLGEAATVLGASSVSGFFAAACSLPFDYVKTQIQKMQPDADGKYPYTGSVDCAVKTFKAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQVQKLQKSYGL*

>Glyma05g29050.2   sequence type=predicted peptide   gene model=Glyma05g29050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKNEGFAAFYKGLSAGLLRQATYTTARLGSFKILTAKAIEANDGKPLPLYQKALCGLTAGAIGATVGSPADLALIRMQADATLPAAQRRNYTNAFHALYRITADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDSVGLGEAATVLGASSVSGFFAAACSLPFDYVKTQIQKMQPDADGKYPYTGSVDCAVKTFKAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQVQKLQKSYGL*

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