SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19790 | AT | Annotation by Michelle Graham. TAIR10: related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253 | SoyBase | E_val: 8.00E-35 | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0035865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to potassium ion | SoyBase | N/A | ISS |
| GO:0048528 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PF00847 | PFAM | AP2 domain | JGI | ISS | |
| UniRef100_A9Y0K9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ERN3 n=1 Tax=Medicago truncatula RepID=A9Y0K9_MEDTR | SoyBase | E_val: 9.00E-97 | ISS |
| UniRef100_UPI0002339F48 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339F48 related cluster n=1 Tax=unknown RepID=UPI0002339F48 | SoyBase | E_val: 0 | ISS |
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Glyma05g29011 not represented in the dataset |
Glyma05g29011 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g157400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g29011.1 sequence type=CDS gene model=Glyma05g29011 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTATCAAAACCAAAGGGCCAAGGAGGGTAGATTCTGTGAGAAACTCAAGATCAAGAATAGGCCAAAGTTTGTAGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGCTTTGGCTTGGAACTTATCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGCCTCCTTCGAGGTTCAAACACTCGCACCAATTTTTCTACTCAAGGGTGTGGCGTTGCTACAAATTCTCCTATATCTCTCAAACTCAGAAACCTCCTTGATCGTAAAGCCATGTCAAATCAAAGTCAAAGTCAAATTCAAAGGCAATCCTCTATGATAAGTTCCACTTTCCAAGGTGCTGATACTTCAGCTAGTCCAAATGTTAGTGCCATCAATAAGATCATGGTTATGGAAAACTACTCTGCTTGTAGTAGTGAAGGTAAGTCTTTGTTTTTGGTTCAGAACCACCAAGTCTGTGATAACCCGTATGGACTAGATATGAATATGATCAACTGTTCAACGGGTATCACACCAAATACATCGCAGTTTGATTATTCTTGGCCATTAGCCCAACAAAGGATTAACGAATTGCCAATATCAAAAGATGATTTTGGTTTGAATGCAGAAAGGCAATTGTCAGGATATGCCACCAATGAGTGCCATGAGGAGGATACGTATGCATATGATGTCAATTATCCTCTCTCCCACTTTTTCTGCTTCACTTGA
>Glyma05g29011.1 sequence type=predicted peptide gene model=Glyma05g29011 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEYQNQRAKEGRFCEKLKIKNRPKFVGVRQRASGKWAAEIKDTSKKIRLWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQGCGVATNSPISLKLRNLLDRKAMSNQSQSQIQRQSSMISSTFQGADTSASPNVSAINKIMVMENYSACSSEGKSLFLVQNHQVCDNPYGLDMNMINCSTGITPNTSQFDYSWPLAQQRINELPISKDDFGLNAERQLSGYATNECHEEDTYAYDVNYPLSHFFCFT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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