Glyma05g29000 - SoyBase

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Report for Sequence Feature Glyma05g29000

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34705665
stop:	34708046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g29000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19780	AT	Annotation by Michelle Graham. TAIR10: tubulin alpha-5 \| chr5:6687212-6688926 FORWARD LENGTH=450	SoyBase	E_val: 0	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051258	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein polymerization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0045298	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: tubulin complex	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1376	KOG	Alpha tubulin	JGI		ISS
PTHR11588	Panther	TUBULIN	JGI		ISS
PF00091	PFAM	Tubulin/FtsZ family, GTPase domain	JGI		ISS
PF03953	PFAM	Tubulin C-terminal domain	JGI		ISS
UniRef100_Q2TFP2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Tubulin A n=2 Tax=Glycine max RepID=Q2TFP2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2TFP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tubulin A n=2 Tax=Glycine max RepID=Q2TFP2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g29000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g29000 not represented in the dataset	Glyma05g29000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g29000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g157300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g29000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g29000

Limit To All Plant Sequences

>Glyma05g29000.1   sequence type=CDS   gene model=Glyma05g29000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAAATCATCAGCATTCACATAGGTCAGGCCGGGATCCAGGTCGGAAACTCCTGCTGGGAACTCTACTGCCTCGAACATGGCATCCAGCCCGACGGCATGATGCCTTCTGACTCCACCTTCGGTGTAGCCCACGACGCCTTCAACACCTTCTTCAGCGAAACCGGATCTGGCAAGCACGTCCCCCGTGCTGTCTTCGTCGACCTCGAACCCACCGTCATCGACGAGGTCCGCTGCGGCACCTACCGTCAACTCTTCCACCCCGAACAACTCATCTCCGGCAAGGAAGACGCCGCCAACAACTTCGCCCGCGGCCACTACACCGTTGGCAAAGAGATCGTAGATCTGTGCTTGGATCGCGTCCGCAAGCTCGCCGACAACTGCACCGGCCTACAAGGCTTCCTCGTCTTCAACGCCGTCGGCGGTGGCACCGGTTCCGGTCTCGGATCTCTCTTACTCGAGCGTCTCTCCGTCGATTACGGCAAAAAATCCAAATTAGGGTTCACCATTTACCCTTCCCCACAGGTTTCAACCGCAGTCGTTGAACCCTACAACAGCGTCCTCTCCACCCACTCCCTCCTGGAACACACCGACGTGGCGGTCCTCTTGGACAACGAAGCCATCTACGACATCTGCAGGAGATCCCTCGACATCGAGAGACCAACCTACACCAACCTCAACAGGCTCATTTCCCAGATCATTTCGTCCCTCACCACTTCCTTGAGGTTCGATGGTGCCATCAATGTGGATATCACTGAGTTCCAGACCAACCTTGTGCCCTACCCTAGGATCCACTTCATGCTTTCGTCCTATGCTCCGGTTATCTCTGCCGCCAAGGCCTACCACGAGCAGTTGTCGGTGCCGGAGATCACCAATGCCGTGTTCGAGCCCGCCAGCATGATGGCCAAGTGTGATCCAAGGCACGGCAAGTACATGGCTTGCTGCTTGATGTACCGTGGTGATGTTGTCCCTAAGGATGTCAATGCTGCTGTTGCCACCATCAAGACTAAGAGGACTGTTCAGTTTGTTGATTGGTGTCCAACTGGATTCAAGTGTGGTATCAACTACCAGCCACCTTCTGTTGTTCCTGGTGGTGACCTTGCTAAGGTTCAGCGTGCTGTATGCATGATCAGCAACAACACCGCAGTTGCTGAGGTGTTCTCTCGCATTGACCACAAGTTTGATCTGATGTATGCCAAGAGGGCTTTTGTTCACTGGTATGTTGGTGAGGGTATGGAAGAAGGGGAGTTTTCTGAGGCTCGTGAGGACCTTGCTGCTCTTGAGAAGGACTATGAGGAGGTTGGAGCTGAAGGAGCGGAAGATGATGAGGAAGGAGAGGACTATTGA

Predicted protein sequences of Glyma05g29000

Limit To All Plant Sequences

>Glyma05g29000.1   sequence type=predicted peptide   gene model=Glyma05g29000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDSTFGVAHDAFNTFFSETGSGKHVPRAVFVDLEPTVIDEVRCGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGAEDDEEGEDY*

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