Report for Sequence Feature Glyma05g28960
Feature Type: gene_model
Chromosome: Gm05
Start: 34684163
stop: 34684654
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g28960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G75390 AT
Annotation by Michelle Graham. TAIR10: basic leucine-zipper 44 | chr1:28292224-28292745 FORWARD LENGTH=173
SoyBase E_val: 2.00E-40 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009410 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus
SoyBase N/A ISS
GO:0030968 GO-bp
Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
GO:0046982 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity
SoyBase N/A ISS
GO:0046983 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity
SoyBase N/A ISS
PTHR22952 Panther
CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED
JGI ISS
PTHR22952:SF60 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00170 PFAM
bZIP transcription factor
JGI ISS
UniRef100_Q0GPG2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP111 n=1 Tax=Glycine max RepID=Q0GPG2_SOYBN
SoyBase E_val: 3.00E-115 ISS
UniRef100_Q0GPG2 UniRef
Annotation by Michelle Graham. Best UniRef hit: BZIP transcription factor bZIP111 n=1 Tax=Glycine max RepID=Q0GPG2_SOYBN
SoyBase E_val: 3.00E-115 ISS
Expression Patterns of Glyma05g28960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma05g28960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g157000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g28960
Coding sequences of Glyma05g28960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g28960.1 sequence type=CDS gene model=Glyma05g28960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTCCTGGTGGAAGTGGAACCTATTCATCTGGTTCCAGTTCTCTTCAAAACTCTGGTTCTGAAGGAGACAGAGACATCATGGAACAGAGGAAGAGGAAGAGAATGTTGTCCAATAGGGAATCGGCACGTAGATCGAGGATAAGGAAACAGCAGCACCTGGAAGGTCTGAGTGCCCAATTGGATCAGCTTAAAAAGGAGAACGCACAAATCAACACAAACATAAGCATCACGACGCAGATGTACCTCAACGTGGAAGCTGAGAACGCGATTCTGAGGGCTCAAATGGGGGAACTGAGCAACAGATTGAACTCTCTGAACGAAATGATAAGTTTCATTAACTCCACCAACAACAACTGCTTGATGATGTTCGATGAGGCACAGGAGACGACCACTCAGTTGTTCAATGATTGTGGCTTCATGGATTATGCTTGGAATGGAATACCAATCATGGCTTCCGCTGACAATGAAATGTTGATCATGTATTGA
Predicted protein sequences of Glyma05g28960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g28960.1 sequence type=predicted peptide gene model=Glyma05g28960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASPGGSGTYSSGSSSLQNSGSEGDRDIMEQRKRKRMLSNRESARRSRIRKQQHLEGLSAQLDQLKKENAQINTNISITTQMYLNVEAENAILRAQMGELSNRLNSLNEMISFINSTNNNCLMMFDEAQETTTQLFNDCGFMDYAWNGIPIMASADNEMLIMY*