Report for Sequence Feature Glyma05g28900
Feature Type: gene_model
Chromosome: Gm05
Start: 34610384
stop: 34616477
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g28900
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G25650 AT
Annotation by Michelle Graham. TAIR10: ACD1-like | chr4:13081021-13083153 REVERSE LENGTH=536
SoyBase E_val: 0 ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0009055 GO-mf
Annotation by Michelle Graham. GO Molecular Function: electron carrier activity
SoyBase N/A ISS
GO:0010277 GO-mf
Annotation by Michelle Graham. GO Molecular Function: chlorophyllide a oxygenase [overall] activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0051537 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding
SoyBase N/A ISS
PTHR21266 Panther
IRON-SULFUR DOMAIN CONTAINING PROTEIN
JGI ISS
PTHR21266:SF3 Panther
PHEOPHORBIDE A OXYGENASE
JGI ISS
PF00355 PFAM
Rieske [2Fe-2S] domain
JGI ISS
PF08417 PFAM
Pheophorbide a oxygenase
JGI ISS
UniRef100_G7LIM7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pheophorbide a oxygenase n=1 Tax=Medicago truncatula RepID=G7LIM7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1K3W8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3W8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g28900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g28900
Paralog Evidence Comments
Glyma08g12070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g28900 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g156300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g28900
Coding sequences of Glyma05g28900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g28900.1 sequence type=CDS gene model=Glyma05g28900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCTGTGTGTGCTTTTTCTGTTGGCACACTTCACATCCCAACAGCACATGAAACATCAAACTCCTTTAGGAAATCCATATTCTTGAGCAACCAAGTGGCTTCACCAGTTTCATTGGTTTTTCTCAGGGGCAGTTCAAAATCCAAGCTTTTAACTGCCTTGTCACCCCCTCCATTGACAGAATCCAGTAACCAACCTGAGGCTGAGCCAGAATTTGAAAGTCATGCAGAGAAATTTGACTGGTACTCTCAGTGGTACCCTTTGATGCCAATTTGTGACCTTGACAAGAGGAAGCCACATGGGAAGAGGGTGTTGGGAATTGATGTGGTTGTGTGGTGGGATAGGAATGAGGGTGCTTGGCAGGTTCATGATGATGCTTGTCCTCATAGATTAGCACCCTTGTCTGATGGAAGGATTGATCAATGGGGCAGGTTGCAGTGTGTGTACCATGGTTGGTGTTTCAATGGCAAAGGAGAATGCCAGCTCATTCCTCAGGCACTCCCTGATGGCCCTCCGGTACATACGTCCAAAAAAGCATGTGTAGCTGCTTACCCAAGTACTGTGCAGAATGATATCTTGTGGTTCTGGCCAAATACTGATCCTCAATACAAAGATATTATTACAAGAAAAAGACCCCCATTCATACCAGAAATAGATGATCCATCGTATACTAAATCAATGGGAAACAGAGACATTCCTTATGGGTATGAAGTACTGATAGAAAATCTTATGGATCCTGCACATGTTCCATATGCACACTATGGACTAATGCGTACTCCGCAACCAAAAGTGAAAGCTGATAGAGAAGGGGGCAGGCCACTTGACATGTCTATTGAAAAGTTAGATATCAATGGCTTTTCAGCAAATCAGGCTTGGGGCAAAAGCAAATTTATGCCACCATGCATTTTTTATGCATATACTCCAGATCAACCTGCCTCATCTGGTGAAACTAAGAAATCATCAGCTAAGAAGAAAATGTGTTTAATCTTTGTTTGCGTTCCGGTTAGTCCTGGTAAAAGCAGATTGATATGGTGCTTCCCAAGAAACTTTGGATTGTGGATGGACAAAATTGTACCACGATGGATATTTCATGTGGGACAAAACCTGATTCTGGATTCAGATTTATATCTCCTCCATGTTGAGGAACATAAACTAAAGGATATTGGTCCAAACAATTGGCACAAAGCCTGTTTTGTGCCAACAAAGTCAGACGCCCTTGTTATTGGTTATAGAACGTGGCTAAGGAAGTATGCAGGTGGTCAGGTTGATTGGAGAGGAAAATATAGTGGAGCTCTTCCTCCAACACCTCCGAGAGAACAGCTTTTGGACAGGTACTGGTCCCATGTGGTGAATTGCAAGAGTTGCAATTCTGCTTATAAGAGCCTCAATGCGGTTGAAGTAATGCTGCAGATCATATCTGTTGCTTCAATTGGGATTGTTGCCGTCATGAAGCATGGTACAATGTCAGTGGCAAAAAGAAATTCAATGGTTGCCTTAGCAGTGCTATCATTTGCACTGTCACGGTGGTTAGCTCACTTCATATACAAAAACTTCCGTTATCATGACTATGAGCATGCCTTCCGCTGA
Predicted protein sequences of Glyma05g28900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g28900.1 sequence type=predicted peptide gene model=Glyma05g28900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAVCAFSVGTLHIPTAHETSNSFRKSIFLSNQVASPVSLVFLRGSSKSKLLTALSPPPLTESSNQPEAEPEFESHAEKFDWYSQWYPLMPICDLDKRKPHGKRVLGIDVVVWWDRNEGAWQVHDDACPHRLAPLSDGRIDQWGRLQCVYHGWCFNGKGECQLIPQALPDGPPVHTSKKACVAAYPSTVQNDILWFWPNTDPQYKDIITRKRPPFIPEIDDPSYTKSMGNRDIPYGYEVLIENLMDPAHVPYAHYGLMRTPQPKVKADREGGRPLDMSIEKLDINGFSANQAWGKSKFMPPCIFYAYTPDQPASSGETKKSSAKKKMCLIFVCVPVSPGKSRLIWCFPRNFGLWMDKIVPRWIFHVGQNLILDSDLYLLHVEEHKLKDIGPNNWHKACFVPTKSDALVIGYRTWLRKYAGGQVDWRGKYSGALPPTPPREQLLDRYWSHVVNCKSCNSAYKSLNAVEVMLQIISVASIGIVAVMKHGTMSVAKRNSMVALAVLSFALSRWLAHFIYKNFRYHDYEHAFR*