Glyma05g28890 - SoyBase

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Report for Sequence Feature Glyma05g28890

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34605983
stop:	34608750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08810	AT	Annotation by Michelle Graham. TAIR10: calcium ion binding \| chr4:5616204-5617862 REVERSE LENGTH=552	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0042175	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear outer membrane-endoplasmic reticulum membrane network	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
UniRef100_Q9LE45	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g08810/T32A17_120 n=1 Tax=Arabidopsis thaliana RepID=Q9LE45_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339F46	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339F46 related cluster n=1 Tax=unknown RepID=UPI0002339F46	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28890

Paralog	Evidence	Comments
Glyma08g12050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g156200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28890

Limit To All Plant Sequences

>Glyma05g28890.1   sequence type=CDS   gene model=Glyma05g28890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGCAACAGTAGCAGAACCGAACCCATAGCCCAAAACATCATCAAACTCATCAGCAATCTCTGCTTCTCCGTCTTTGTCTTCTCTGTCTTAATCTTCACCGTCATAGCCATAACCTACCATCCCCCAGACCCATGGCTCGAGTCCACCCCTGCCCTAACCAACCTCTTCACCCAATCACAAAATGCCACTTTCCGAATCGACTCCTCCGTCCTCAAAACCGGCGAAGACCTCGCTCCCTCGCCGCAAGACCCTCCCCTCCCGTCGCCGCCACCCTCCGCCTCCGCCGTCACCGAAGCCGTCATCGAGAAATCCGAACAGCAAATTGCCAACTCCACCGCTAACTCCACCGCTGATTCCACCGACTCCACCGACGCGGCGCTTCCTTCTCCCCCCGCCTGCGACGGAACCATAAACTGCTCCAACCCTCGCGTTCGTATTGCTATTCAGAGATTCAACCTCCGCGCGTTCAAGTCCATTGCCTTCTTCGACTACCAACCGCCGGTGAACGGCTCCGTCGCCGGCGAGTGCGACGTCGCTTGGCGCTTCCGGAACAAGCGCGAACGCTCCTGGCGCAAGTACCGCGACTTTCGCCGCTTCAAGATCGCAGTCACCGACGACTGCAGGTACAAGGTGGTGCACGCCGGCGGCTGGCACTCCGGCGCCAATGCTCGCCGGAATATGACGCGCTCCGGTGCCGCCAGGGGTGGTAAGACCCTGCCGCCGCGGGCTTCAGCCCGCGATGATGAGATCAATGACACGATTCCGACTTTGGGATCGGAGACTAATTTTAGGAATGGGAAGTATTTGTATTACTCGAGAGGTGGGGATTACTGCAAGGGAATGAATCATTATTTGTGGAGTTTCTTGTGTGGATTGGGGGAAGCTATGTTTTTGAACAGGACTTTTGTTATGGATTTGAGTGTTTGTTTGGCTTCAACTTATAACCCTAGTAACAAGGATGAGGAGGGGAAGGATTTTAGGTACTACTTCGATTTCGAGCATTTGAAGGAGACGGCTTCGATTGTGGAGGAAGGTGAGTTTTTGAGGGATTGGAAGAATTGGGATAAAACGCATTTGAAGAAGAAGATTCCTGTTAGGAAGGTTGTCAATCACAAGGTGACTCCTATGCAGCTTAAGAAGGATAAGAGTACGATTATATGGAGGCAGTTTGATGCGCCGGAGCCTGAAAATTATTGGTATAGGGTTTGTGAAGGTGAGGCCGCTAAGAATATTCAGAGGCCTTGGCATGCTGTGTGGAAATCCAAGAGGTTGATGAATATTGTTACTGAGATTAGTGGAAGGTTGGACTGGGATTTTGACGCCGTTCATGTGGTTCGGGGAGAGAAAGCTCAGAACAAGGAGTTGTGGCCTCATTTGGATTATGATACGTCGCCGGATGTTCTTGTCGAGAAGCTTAAATGGATGGTTCAGCCTTGGAGACATTTGTACATTGCCACCAATGAGCCTTATTATAATTACTTTGATAAGTTGAGGTCAAATTACAAGGTGCATCTGCTTGATGACTATAAGGAGCTGTGGGGAAATACAAGTGAGTGGTATAACGAGACCACACTTCTCAACAATGGAAAGCCTGTTGAGTTTGATGGGTACATGAGAGTTGCAGTGGATACTGAGGTCTTTTACCGTGGAAAGACACGCGTGGAAACGTTCTACAATTTGACTAAAGATTGCAAGGATGGAGTTAATACATGCTGA

Predicted protein sequences of Glyma05g28890

Limit To All Plant Sequences

>Glyma05g28890.1   sequence type=predicted peptide   gene model=Glyma05g28890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNSSRTEPIAQNIIKLISNLCFSVFVFSVLIFTVIAITYHPPDPWLESTPALTNLFTQSQNATFRIDSSVLKTGEDLAPSPQDPPLPSPPPSASAVTEAVIEKSEQQIANSTANSTADSTDSTDAALPSPPACDGTINCSNPRVRIAIQRFNLRAFKSIAFFDYQPPVNGSVAGECDVAWRFRNKRERSWRKYRDFRRFKIAVTDDCRYKVVHAGGWHSGANARRNMTRSGAARGGKTLPPRASARDDEINDTIPTLGSETNFRNGKYLYYSRGGDYCKGMNHYLWSFLCGLGEAMFLNRTFVMDLSVCLASTYNPSNKDEEGKDFRYYFDFEHLKETASIVEEGEFLRDWKNWDKTHLKKKIPVRKVVNHKVTPMQLKKDKSTIIWRQFDAPEPENYWYRVCEGEAAKNIQRPWHAVWKSKRLMNIVTEISGRLDWDFDAVHVVRGEKAQNKELWPHLDYDTSPDVLVEKLKWMVQPWRHLYIATNEPYYNYFDKLRSNYKVHLLDDYKELWGNTSEWYNETTLLNNGKPVEFDGYMRVAVDTEVFYRGKTRVETFYNLTKDCKDGVNTC*

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