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Report for Sequence Feature Glyma05g28880

Feature Type:gene_model
Chromosome:Gm05
Start:34603322
stop:34605760
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g28880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18100AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133 SoyBaseE_val: 2.00E-82ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG0878 KOG 60S ribosomal protein L32 JGI ISS
PTHR23413Panther 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N JGI ISS
PF01655PFAM Ribosomal protein L32 JGI ISS
UniRef100_B9T5H6UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L32, putative n=1 Tax=Ricinus communis RepID=B9T5H6_RICCO SoyBaseE_val: 1.00E-88ISS
UniRef100_I1KSB8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSB8_SOYBN SoyBaseE_val: 2.00E-92ISS

Expression Patterns of Glyma05g28880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28880
ParalogEvidenceComments
Glyma08g12030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g156100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g28880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g28880
>Glyma05g28880.1   sequence type=CDS   gene model=Glyma05g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTACCTCTGCTCTCGAAGAAGATCGTGAAGAAGAGGGTGAAGAAGTTCAAGAGGCCTCAGAGTGACAGGAAAATTTCCGTCAAGACAAACTGGCGTAGACCAAAGGGTATAGATTCCCGTGTTAGGAGAAAGTTCAAGGGATGCACTTTGATGCCAAACATCGGTTATGGTTCTGACAAGAAGACCCGCCACTATCTCCCTAATGGTTTTAAGAAATTTGTTGTTCACAATGTGAAGGACTTGGAACTGCTCATGATGCACAACAGGACTTACTGTGCTGAGATTGCTCACAATATATCCACAAGAAAGAGAAAAGATATAGTTGAGAGAGCTGCGCAACTTGATGTTGTTGTGACAAACAAAACAGCCAGATTACGCAGCCAGGAGGATGAATAG
Predicted protein sequences of Glyma05g28880
>Glyma05g28880.1   sequence type=predicted peptide   gene model=Glyma05g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNISTRKRKDIVERAAQLDVVVTNKTARLRSQEDE*






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