Glyma05g28840 - SoyBase

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Report for Sequence Feature Glyma05g28840

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34585712
stop:	34589872
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19485	AT	Annotation by Michelle Graham. TAIR10: transferases;nucleotidyltransferases \| chr5:6573907-6576352 REVERSE LENGTH=456	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG1462	KOG	Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1)	JGI		ISS
PTHR22572	Panther	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	JGI		ISS
PF00483	PFAM	Nucleotidyl transferase	JGI		ISS
UniRef100_G7LHY9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor eIF-2B subunit gamma n=1 Tax=Medicago truncatula RepID=G7LHY9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3W2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3W2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28840

Paralog	Evidence	Comments
Glyma08g11970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g155700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28840

Limit To All Plant Sequences

>Glyma05g28840.1   sequence type=CDS   gene model=Glyma05g28840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCCAAGTCGTCGTTCTCGGCGGTGGCGTCTCCAAGAAGCTCATCCCTCTCGTTTCGCAGGAGCTTCCGAACGCGTTGCTTCCGTTGGCGAATCGCCCCGTTCTCTCCTACGTTCTCGAGTACTTGGAGCTTAGCAACCTCAAAGATCTCATTGTGGTGGTCGAAGGCGAAGAAGCGGCTCTTCATGTTGGGGCTTGGATTTCGGGGGCTTATGCTGATCGCCTCCACGTTGAGGTTGCTGCAGTTCCTGAGGATGTGGGGACAGCGGGTGCAATTCGGGCCATTTCACATCACCTAACTGCTAAAGACATTTTGGTTGTCAGTGGTGATCTTGTTACTGATGTGCCACTTGGTGCTGTTGCAGCTACTCATAGACGGCATGATGCAGTTGTCACTGCTATGCTTTGCTCTGCTCCTGTAAGTGGACCTTTGGAGTCAGTATCCTCTGGTGGGAAAGACAAAACCAAGAAACCTGGCCGCTATGATTTGATAGGGCTGGATCCCACAAAACAGTTTTTAGTTCACATAGCAACTGGAGCAGAAGTTGAAAAAGATCTTCGAATTCAGAAGAGCATGCTCCCAGCAGTTGGCCAGATAGAAATAAGAGCTGATCTAATGGACGCCCACTTGTATGCATTCAAAAGATCAGTTCTACAAGAAGTTCTAGATCAGAAAAGTGCATTTCATAGCTTAAAGCATGATGTACTGCCATATCTAGTCCGGAGCCAACTGAAATCAGAAGTATTATTAAATGGCATACCACAAGCAGAAGAAAACAGAACTGAAAAGGTTATTTCTCAAAGCAATCAACAAATGCTATCTCAAATACTCGCTAATGCATCTGAACCAACCTTTCATCTACGACATGCACTGGGTCCTTATGGTTCTACTTTTGATCGAAGAACCCACAAATGCTGTGTGTATATTGCTGGAAGCAGCAAATACTGTGCTCGCTTAAATTCTATACAAGCATACACTGACATTAACCGTGATGTGATAGGAGAGGCTAGTCGCTTATCAGGGTATTCCTTCTCTACTCTAAACAACATTATCCATCCTTCTGCAGAGCTTGGGGCAAAAACTCCTCTATCCATTTCTGGGAGAGAACTCTTTGTTGGACCACATTGTATACTGGGGGAAGGTTCACAGATGGGTGACAAATGCAGTGTGAAACGGTCTGTCATTGGCCGTCATTGTCGGATTGGTGCTAATGTTAAGGTTGTTAATTCAGTAGTTATGAATCATGTTACTATCGGAGAATCTTGTTCAATCCAAGGTTCTGTTATCTGCAGCAACGTACAGCTCCAAGAACGTGCTGTACTAAAAGATTGCCAAGTTGGAGCAGGTTTTGTGGTCACTGCTGGTAGTGAGTGCAAGGGGGAGGTCTTGGCAAAGAAATGA

Predicted protein sequences of Glyma05g28840

Limit To All Plant Sequences

>Glyma05g28840.1   sequence type=predicted peptide   gene model=Glyma05g28840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFQVVVLGGGVSKKLIPLVSQELPNALLPLANRPVLSYVLEYLELSNLKDLIVVVEGEEAALHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLGAVAATHRRHDAVVTAMLCSAPVSGPLESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLKSEVLLNGIPQAEENRTEKVISQSNQQMLSQILANASEPTFHLRHALGPYGSTFDRRTHKCCVYIAGSSKYCARLNSIQAYTDINRDVIGEASRLSGYSFSTLNNIIHPSAELGAKTPLSISGRELFVGPHCILGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTIGESCSIQGSVICSNVQLQERAVLKDCQVGAGFVVTAGSECKGEVLAKK*

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