Glyma05g28720 - SoyBase

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Report for Sequence Feature Glyma05g28720

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34514595
stop:	34516259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44300	AT	Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \| chr2:18307468-18308286 REVERSE LENGTH=204	SoyBase	E_val: 5.00E-47	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
PF00234	PFAM	Protease inhibitor/seed storage/LTP family	JGI		ISS
UniRef100_G7LHX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Non-specific lipid-transfer protein-like protein n=1 Tax=Medicago truncatula RepID=G7LHX9_MEDTR	SoyBase	E_val: 8.00E-82	ISS
UniRef100_I1K3U8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3U8_SOYBN	SoyBase	E_val: 3.00E-136	ISS

Expression Patterns of Glyma05g28720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28720

Paralog	Evidence	Comments
Glyma08g11840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g154600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g28720

Limit To All Plant Sequences

>Glyma05g28720.2   sequence type=transcript   gene model=Glyma05g28720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAGGGTGCAAACAAATGTGGTTATGAACGTGCCATAAAGTTCATAACTGGCAAACAAGCAACGCAAAGCACTAGAAACTAGGAACAGAGAAGCAATCAGTTGCCAAACTATTTTTCTCTCTCCTTTTTTTGACTTTTCTTTCTTTCTGCAACTCCAAAATGTCTTCCATAGGGGCAAAAAATCTAGCACTCTCCTCAGCCTTTTTGCTCCTTTTGGTCGGTTTTGCAACCTCAGACATCAACCAAGACAAAGCAGAATGTACCGACAAACTTCTTGGTCTAGCTGGTTGTCTTCCCTATGTTGGTGGTGAAGCCAAAGTCCCCGCCATGGATTGTTGCTCTGGTATCAGAGAGGTTATTGACAAGAGCAAGAGGTGCCTCTGCATCCTCATCAAGGATCGTGATGACCCTAATCTTGGCCTCAAGATCAACGTCACCCTTGCTCTAAGTTTACCAGATGCTTGTCAAACACCCACCAATATAACTCAGTGTGTTGATCTTTTGCATTTGGCACCTAACTCCACGGAAGCTAAGGTGTTTGAGGGGTTTAAAAATGCCTTGACCAACAAAACTAGTCCCTCCTCAGTCCCTGCTAATAACGCGACTGCTAATGGAACAAGCACGAGCGCGAACAACAACAGCAGTAGTGGGTGGGGAAAGAGGTGGTTGGTGACAGAGGTGCTTTGTGGGATTTTACCGTTTGTTTTCATTTCCCATTTATTCCTCTTCGTAGTTTGAACCGAGATCAAGAGTACTAGGATGTTTTGGTGGTTGTGTCTATTTATTTCTCGGATTCATTACGTGTTCTGCATATAAGTATATGTTATGCAATTTGTGATTTATTTTTACTAGGTGCTGTACTGTCTTTTTCCTTTAGTTATTTTTGCCTCAGTGTGAACCCATCCTCTCTTGCCTGCATGATTAATTCTCCAACTGATTGAAGGGGACCTGTTACTTGACCTCAACAATGCGTATGCTTTAAATATAATTGTGCTAGGACCTTCTATTTACACTTGGTATTACGTGATCGGTTGGATCGATGTTGACACCTTTTCTAAGTGTTCATTTATTTAATGAGTGAATAGGTATTTTGATCCCATCTTTGCACTCATTTTATAAATTAGTCTCTATCTTATTGAAATGTAAAAAATAGTCTCTATGTTTGTATAAGTATTACAAAATAGTCATTGTCATTAAATTTGAAAATAACGTCGTTAATGAGA

Coding sequences of Glyma05g28720

Limit To All Plant Sequences

>Glyma05g28720.1   sequence type=CDS   gene model=Glyma05g28720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCATAGGGGCAAAAAATCTAGCACTCTCCTCAGCCTTTTTGCTCCTTTTGGTCGGTTTTGCAACCTCAGACATCAACCAAGACAAAGCAGAATGTACCGACAAACTTCTTGGTCTAGCTGGTTGTCTTCCCTATGTTGGTGGTGAAGCCAAAGTCCCCGCCATGGATTGTTGCTCTGGTATCAGAGAGGTTATTGACAAGAGCAAGAGGTGCCTCTGCATCCTCATCAAGGATCGTGATGACCCTAATCTTGGCCTCAAGATCAACGTCACCCTTGCTCTAAGTTTACCAGATGCTTGTCAAACACCCACCAATATAACTCAGTGTGTTGATCTTTTGCATTTGGCACCTAACTCCACGGAAGCTAAGGTGTTTGAGGGGTTTAAAAATGCCTTGACCAACAAAACTAGTCCCTCCTCAGTCCCTGGTGCTAATAACGCGACTGCTAATGGAACAAGCACGAGCGCGAACAACAACAGCAGTAGTGGGTGGGGAAAGAGGTGGTTGGTGACAGAGGTGCTTTGTGGGATTTTACCGTTTGTTTTCATTTCCCATTTATTCCTCTTCGTAGTTTGA

>Glyma05g28720.2   sequence type=CDS   gene model=Glyma05g28720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCATAGGGGCAAAAAATCTAGCACTCTCCTCAGCCTTTTTGCTCCTTTTGGTCGGTTTTGCAACCTCAGACATCAACCAAGACAAAGCAGAATGTACCGACAAACTTCTTGGTCTAGCTGGTTGTCTTCCCTATGTTGGTGGTGAAGCCAAAGTCCCCGCCATGGATTGTTGCTCTGGTATCAGAGAGGTTATTGACAAGAGCAAGAGGTGCCTCTGCATCCTCATCAAGGATCGTGATGACCCTAATCTTGGCCTCAAGATCAACGTCACCCTTGCTCTAAGTTTACCAGATGCTTGTCAAACACCCACCAATATAACTCAGTGTGTTGATCTTTTGCATTTGGCACCTAACTCCACGGAAGCTAAGGTGTTTGAGGGGTTTAAAAATGCCTTGACCAACAAAACTAGTCCCTCCTCAGTCCCTGCTAATAACGCGACTGCTAATGGAACAAGCACGAGCGCGAACAACAACAGCAGTAGTGGGTGGGGAAAGAGGTGGTTGGTGACAGAGGTGCTTTGTGGGATTTTACCGTTTGTTTTCATTTCCCATTTATTCCTCTTCGTAGTTTGA

Predicted protein sequences of Glyma05g28720

Limit To All Plant Sequences

>Glyma05g28720.1   sequence type=predicted peptide   gene model=Glyma05g28720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIGAKNLALSSAFLLLLVGFATSDINQDKAECTDKLLGLAGCLPYVGGEAKVPAMDCCSGIREVIDKSKRCLCILIKDRDDPNLGLKINVTLALSLPDACQTPTNITQCVDLLHLAPNSTEAKVFEGFKNALTNKTSPSSVPGANNATANGTSTSANNNSSSGWGKRWLVTEVLCGILPFVFISHLFLFVV*

>Glyma05g28720.2   sequence type=predicted peptide   gene model=Glyma05g28720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIGAKNLALSSAFLLLLVGFATSDINQDKAECTDKLLGLAGCLPYVGGEAKVPAMDCCSGIREVIDKSKRCLCILIKDRDDPNLGLKINVTLALSLPDACQTPTNITQCVDLLHLAPNSTEAKVFEGFKNALTNKTSPSSVPANNATANGTSTSANNNSSSGWGKRWLVTEVLCGILPFVFISHLFLFVV*

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