Glyma05g28680 - SoyBase

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Report for Sequence Feature Glyma05g28680

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34480242
stop:	34490150
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04850	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-associated (UBA)/TS-N domain-containing protein \| chr1:1365311-1368706 REVERSE LENGTH=413	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2699	KOG	Predicted ubiquitin regulatory protein	JGI		ISS
PTHR13020	Panther	UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAINING	JGI		ISS
PTHR13020:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
PF09409	PFAM	PUB domain	JGI		ISS
UniRef100_G7LHW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=1 Tax=Medicago truncatula RepID=G7LHW1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3U6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3U6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28680

Paralog	Evidence	Comments
Glyma08g11800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g154200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28680

Limit To All Plant Sequences

>Glyma05g28680.1   sequence type=CDS   gene model=Glyma05g28680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGCGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGTTGAGAACCGTAGAAGAAGCGCAAGAGCACGCCGAACTCACTTCCCACTCCAACTTCTCCGAGTCCACCGAACCGGTTCTCAACCTCATCTGCTCCGTTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAAAGAACCGGCCACACCGAGTTCGTTGACAAGACTTCCGAGGCCGTCAAACCGATTAGTTTGGAGGCTCCGAAGGTGGATGCAACTGCTTCGTCGGAAAACCCTTCCGCTGCTGCATCCACTGACAAAAATGAAGAAATGGTTGTTCCCGAAGTGGACAAGAAGCTGCTCAAGGAACTTGAATCCATGGGGTTTTCAACGGCACGGGCAACGCGGGCGCTTCATTACTCTGGTAATGCTGGCCTTGAGTCTGCTGTAAATTGGATAGTAGAGCACGAGAATGATCCTGACATAGATCAGATGCCCTTGGTACCCGCCAACACCAAAATTGAGGCTCCTAAACCTTTGCTTACCCCAGAAGAAATGAAGGCCAAACAGCAGGAACTAAGGGAGAGAGCTCGTAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAGAGAGAAAGAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGCGGATTGAAGAAGAGAATGAGAGGAAACGTTTGTTGGCCTTGAAAAAAGTAGAGAAAGAGGAAGAGAAAAGGGCTAGGGAGAAAATCAAGAAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGACTTGGATTGCCTCCAGAGGAACCCTCAGCAGCCAAACCTTCACCTGCGCCTATTGTGGAGGAGAAAAAGAGTTTTGTGCCTGTTAGGCCTGCCACAAAAGCTGAGCAAATGAGGGAGTGCCTCCGTTCTCTCAAGCAGAACCACAAGGAGGATGACGCTAGAGTGAAGAGAGCATTCCAAACTCTTCTAACTTATGTAGGGAATGTTGCCAGAAATCCCGATGAAGAAAAGTTCAGGAAGATACGTCTTAGTAACCAATCTTTTCAGGACAGAGTTGGTTCCTTGAAAGGGGGCATTGAATTTCTAGAAATTTGTGGGTTTGAGAAGATCGATGGTGGTGAGTTTTTGTTTTTGCCTAGGGACAAAGTTGAAATGGCGGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCATTTTTTGGAGTTCTTTAG

Predicted protein sequences of Glyma05g28680

Limit To All Plant Sequences

>Glyma05g28680.1   sequence type=predicted peptide   gene model=Glyma05g28680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLICSVCSKPCRSKTESDLHTKRTGHTEFVDKTSEAVKPISLEAPKVDATASSENPSAAASTDKNEEMVVPEVDKKLLKELESMGFSTARATRALHYSGNAGLESAVNWIVEHENDPDIDQMPLVPANTKIEAPKPLLTPEEMKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALKKVEKEEEKRAREKIKKKLEEDKAERRRRLGLPPEEPSAAKPSPAPIVEEKKSFVPVRPATKAEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQDRVGSLKGGIEFLEICGFEKIDGGEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL*

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