Report for Sequence Feature Glyma05g28580
Feature Type: gene_model
Chromosome: Gm05
Start: 34404235
stop: 34409029
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g28580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G13800 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF803) | chr4:8002129-8003858 REVERSE LENGTH=336
SoyBase E_val: 5.00E-155 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
KOG2922
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12570 Panther
UNCHARACTERIZED
JGI ISS
PF05653 PFAM
Protein of unknown function (DUF803)
JGI ISS
UniRef100_G7JA72 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Magnesium transporter NIPA2 n=1 Tax=Medicago truncatula RepID=G7JA72_MEDTR
SoyBase E_val: 3.00E-173 ISS
UniRef100_I1K3T6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K3T6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g28580
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g28580
Paralog Evidence Comments
Glyma08g11601 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g28580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g153000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g28580
Coding sequences of Glyma05g28580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g28580.1 sequence type=CDS gene model=Glyma05g28580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGGCGTCTTCGGACAACGTAACTGGGTTTGTTTTGGCTGTCTGTTCCAGCGTTTTCATTGGCTCTAGCTTCATAATAAAAAAGATGGGCCTTAAAAAGGCTGGTGCCACAGGGAAAAGAGCAGGCGCGGGAGGACATGCATACCTATATGAACCTTGGTGGTGGTTTGGAATGATCTCTATGATTGTTGGGGAAGTAGCCAATTTTGCAGCTTATGCATTTGCTCCTGCACTACTTGTAACTCCTTTGGGAGCTTTAAGTATCATTTTCAGTGCAATACTAGCTCACTTTATCTTAAAAGAGAGGTTGCACATATTTGGTGTGCTTGGATGTGCTCTTTGTATGGTGGGATCTACAACTATTGTATTGCATGCTCCCCATGAAAGAGTTATTCACTCTGTTAAGGAAGTGTGGCAACTTGCTACAGAACCAGGCTTTCTAATCTACATGTGTATAGTTGTGGTTGTGGTTTGCATCCTTATTTTCTATTGTGCTCCACGATATGGGACAACCTATCTGGTTATATATGTTGGAATATGCTCTCTCACAGGCTCAATTACGGTTATGAGTGTGAAAGCAGTGTCAATAGCTATGAAGTTAACATTGGAAGGCAACAACCAATTCATTTACTTTCAGACCTGGTTCTTTACGATTATTGTGATAGGATGTTGTCTTTTGCAGATTAACTACTTGAACAAGGCTTTGGACACCTTTAACACTGCAGTTGTATCACCAATTTACTATGTCATGTTTACATCATTCACCATCTTTGCCAGCATAATCATGTTTAAGGAATGGGACACACAAGATGCATCTCAAATTGCTACCGAGGTTTGTGGCTTTATCACAATTTTATCTGGGACCTTTCTTCTTCACAAAACCAAAGATATGGGAAATAGACCCATAGAGTCTCCTGTTTTTGTAAGTACTCCACAAAATGTTAGTAGTCACTCAGGGACTTAA
Predicted protein sequences of Glyma05g28580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g28580.1 sequence type=predicted peptide gene model=Glyma05g28580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGASSDNVTGFVLAVCSSVFIGSSFIIKKMGLKKAGATGKRAGAGGHAYLYEPWWWFGMISMIVGEVANFAAYAFAPALLVTPLGALSIIFSAILAHFILKERLHIFGVLGCALCMVGSTTIVLHAPHERVIHSVKEVWQLATEPGFLIYMCIVVVVVCILIFYCAPRYGTTYLVIYVGICSLTGSITVMSVKAVSIAMKLTLEGNNQFIYFQTWFFTIIVIGCCLLQINYLNKALDTFNTAVVSPIYYVMFTSFTIFASIIMFKEWDTQDASQIATEVCGFITILSGTFLLHKTKDMGNRPIESPVFVSTPQNVSSHSGT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
