Glyma05g28540 - SoyBase

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Report for Sequence Feature Glyma05g28540

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34373713
stop:	34376269
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26330	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 71, subfamily B, polypeptide 37 \| chr3:9646873-9648536 REVERSE LENGTH=500	SoyBase	E_val: 7.00E-47	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI		ISS
PTHR25943	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25943:SF170	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_G7K4E9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 71D10 n=1 Tax=Medicago truncatula RepID=G7K4E9_MEDTR	SoyBase	E_val: 4.00E-94	ISS
UniRef100_I1K3T2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K3T2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28540

Paralog	Evidence	Comments
Glyma08g11570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g28540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28540

Limit To All Plant Sequences

>Glyma05g28540.2   sequence type=CDS   gene model=Glyma05g28540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACACAAGAGAAAAAGAGGCAACTAAACTTGTTAGAAATGTCTATGCCAATGAAGGGTCAATTATCAATCTTACTACTAAGGAAATTGAGTCAGTGACAATTGCTATAATTGCAAGGGCAGCTAATGGTACAAAATGCAAAGACCAAGAAGCTTTCGTGTCAACGATGGAGCAAATGCTAGTGCTATTGGGAGGAATGAAAACTAGAGTTGAAAGAGCACAGAGAGAGAATGACAAGATCCTAGAACATATGGTCAAGGATCACCAGGAAAATAGGAACAAGCATGGAGTGACGCACGAGGATTTTATTGATATTCTTCTCAAAACTCAAAAGAGAGATGACTTGGAAATTCCCATGACCCACAACAACATCAAAGCACTCATCTGGGACATGTTTGCTGGTGGGACAGCTGCACCAACAGCAGTTACAGTATGGGCAATGTCAGAACATATGAAAAATCCTAAGGTTATGGAAAAGGCACATACTGAGATAAGAAAGGTCTTCAATGTGAAAGGTTATGTGGATGAAACAGGCCTTAGACAGTTCTCAAGAGAAAACAGTGAGGCATGTGTAATCAATGGATATGAAATCCCTGCAAAGAGCAAAGTCATTATCAATGCTTGGGCCATTGGGAGAGAATCAAACTCTTATGATTTCAGTGGCACAAACTTTGAATACATCCCCTTTGGGGCTGGAAGGAGAATTTGTCCTGGAGCTGCATTTTCCATGCCTTACATGTTGCTGTCAGTGGCCAATTTGCTTTACCATTTTGTTTGGGAGCTGCCAAATGGAGCAATACACCAAGAATTGGACATGACTCATGAGTCTTTTGGCCTAACTGTCAAAAGAGCAAATGATCTTTGCTTAATTCCCATTCCTTATCACCCAACATCCTAA

Predicted protein sequences of Glyma05g28540

Limit To All Plant Sequences

>Glyma05g28540.2   sequence type=predicted peptide   gene model=Glyma05g28540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HTREKEATKLVRNVYANEGSIINLTTKEIESVTIAIIARAANGTKCKDQEAFVSTMEQMLVLLGGMKTRVERAQRENDKILEHMVKDHQENRNKHGVTHEDFIDILLKTQKRDDLEIPMTHNNIKALIWDMFAGGTAAPTAVTVWAMSEHMKNPKVMEKAHTEIRKVFNVKGYVDETGLRQFSRENSEACVINGYEIPAKSKVIINAWAIGRESNSYDFSGTNFEYIPFGAGRRICPGAAFSMPYMLLSVANLLYHFVWELPNGAIHQELDMTHESFGLTVKRANDLCLIPIPYHPTS*

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