Glyma05g28530 - SoyBase

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Report for Sequence Feature Glyma05g28530

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34365046
stop:	34370156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13840	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr4:8014088-8016326 REVERSE LENGTH=428	SoyBase	E_val: 6.00E-112	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_C6T849	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T849_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SVM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g13840/F18A5_230 n=2 Tax=Arabidopsis thaliana RepID=Q9SVM9_ARATH	SoyBase	E_val: 3.00E-109	ISS

Expression Patterns of Glyma05g28530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28530

Paralog	Evidence	Comments
Glyma08g11560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g152500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28530

Limit To All Plant Sequences

>Glyma05g28530.1   sequence type=CDS   gene model=Glyma05g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTTAGAAGAGTGTGTAGTGCATGATGTGAGGCTATCCTCAGTTGGGCCAGGCCGGGCCACCAGGTCGGAGGTGTTCCACAGCCCGGGTGGCTTGGACTTGGCCATGAAGCTTCACTATCTCAGGGTGGTGTACTTCTTTGCTAGTGAGGCTGCACAAGACCTAACCATCATGAAAATTAAGGAGGCCATGTTCACTTTGCTCAACCATTACTTCATCACATGTGGCCGCTTCCGGCGATCGGATTCCGGTAGGCCCTTAATCAAGTGCAATGATTGTGGAGTAAGGTTCATTGAGGCCAAGTGCAGCAAAACCCTAGATGAGTGGCTAGCCATGAAGGATTGGCCCTTGTACAAGTTGCTCGTCTCTCACCAAGTCATTGGCCCAGAACTATCTTTTTCTCCTCCTGTTTTGTTGCAGGTAACTAAATTTAAGTGCGGTGGAATTTCATTGGGTCTTAGTTGGGCCCATGTATTGGGGGACCCGCTTTCAGCTTCAGAATTCATTAACTCTTGGGGCCTAATATTGAAAAATATGGGCCTACAACAGCTTTTTAACATCCCAAGATCCATCCCAACACCCAGACAACCCGGACCAGAAAAGGATCCAGTTTCAGCAAAACGGGTCGACCCGGTGGGGGATCATTGGATCCCAGCCAACAACAAAAAAATGGACACATTCTCCTTCCACCTAACTAGCTCCCAGTTGAACTACTTGCAAGCACAAATTTGGGGTCCAAGTCTTGACCAAACCCCTCTTTTTGAATCCCTATGTGCCATGATTTGGCGTTGCATGGCCCGGGTTCGATCAGGATCCGAACCCAAAACCGTGACCGTGTGTAGAACCGACCCGTATAAGAGGTCAAATGATATCATTGGTAATAACCAAGTGATATGCAAGGTTGAGGTTGAAAGTGAATGCTCAATTGTAGACACTGATTTGACAATCTTAGCTAGCATGCTTGTGGATCAAGGAGTGGATGAGAGGAAGCAAATTGAGGAAGCCATTGAGAAAGACCAAGGTGTGAGTGATTTCTTTGTGTATGGTGTCAATTTGACATTTCTAGACTTGGAAGACACCAATGTGTATGACTTGCAATTGAAGGGACACACACCAAAGTTTGTTTACTACACCCTTCAAGGGGTTGGAGATGAAGGGATTGTTTTGGTGTATCCGTGGCCAAAAGGTTCTATCGAGAATGGTGTTGATGGGAAGTTTGTGACCATGATTATACCGGAGGATGAAATGGTGAAGCTTAAATCTGAGCTCAAGATAATTGGTCTTCTGCTTGAGGATAATTAA

Predicted protein sequences of Glyma05g28530

Limit To All Plant Sequences

>Glyma05g28530.1   sequence type=predicted peptide   gene model=Glyma05g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLEECVVHDVRLSSVGPGRATRSEVFHSPGGLDLAMKLHYLRVVYFFASEAAQDLTIMKIKEAMFTLLNHYFITCGRFRRSDSGRPLIKCNDCGVRFIEAKCSKTLDEWLAMKDWPLYKLLVSHQVIGPELSFSPPVLLQVTKFKCGGISLGLSWAHVLGDPLSASEFINSWGLILKNMGLQQLFNIPRSIPTPRQPGPEKDPVSAKRVDPVGDHWIPANNKKMDTFSFHLTSSQLNYLQAQIWGPSLDQTPLFESLCAMIWRCMARVRSGSEPKTVTVCRTDPYKRSNDIIGNNQVICKVEVESECSIVDTDLTILASMLVDQGVDERKQIEEAIEKDQGVSDFFVYGVNLTFLDLEDTNVYDLQLKGHTPKFVYYTLQGVGDEGIVLVYPWPKGSIENGVDGKFVTMIIPEDEMVKLKSELKIIGLLLEDN*

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