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Report for Sequence Feature Glyma05g28510

Feature Type:gene_model
Chromosome:Gm05
Start:34318928
stop:34320836
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g28510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23820AT Annotation by Michelle Graham. TAIR10: UDP-D-glucuronate 4-epimerase 6 | chr3:8603645-8605027 FORWARD LENGTH=460 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0009225GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016857GO-mf Annotation by Michelle Graham. GO Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives SoyBaseN/AISS
GO:0050378GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate 4-epimerase activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
KOG1371 KOG UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF42Panther UDP-GLUCOSE 4-EPIMERASE JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
UniRef100_G7JA85UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-D-glucuronic acid 4-epimerase n=1 Tax=Medicago truncatula RepID=G7JA85_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K3S8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3S8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g28510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28510
ParalogEvidenceComments
Glyma08g11510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g152300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g28510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g28510
>Glyma05g28510.1   sequence type=CDS   gene model=Glyma05g28510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCACCGGACACCAGCAAAACCATAAAGCTGGTGCGTAACAACAGCTACCTCCGCAGACTCAACATATCCTTCAAAATCCTCTTCCTCCTCCTCGCCCTCCTCCTCCTTTACACTCTTTCCACCCACCACCACCACCTCCCCCTCTCCTCCGCCTGGGAGAATCAGGTCCGCCACTCCGCCCTCCCTCGCCGCCCCAACGGCATGTCGGTGCTTGTCACCGGCGCCGCGGGCTTCGTCGGCTCCCACTGCTCCCTCGCCCTCAAGAAGCGCGGCGACGGCGTCCTCGGCCTCGACAACTTTAACCCCTACTACGACCCCTCCCTAAAACGCGCCCGCCAACACCTCCTGGCGAAACACCGAATCCTCATCATCGAAGCCGACCTAAACGACGCGCCGTTGCTCGCCAAGCTCTTCGACGTCGTTTCCTTCTCCCACGTCCTCCACCTCGCAGCACAAGCGGGCGTCCGCTACGCCATGCAGAACCCCCAGTCCTACGTGGCATCCAACATCGCCGGCTTCGTCACCCTTCTAGAAGCTTCCAAAACCTCCAACCCCCAGCCCGCCATCGTTTGGGCCTCTTCCAGTTCCGTCTATGGGCTCAATAATGAAAGCCCATTCTCCGAACTCCACCGTACGGACCAGCCCGCGAGCCTCTACGCCGCAACTAAAAAAGCCGGCGAGGCCATCGCGCATACCTACAATCATATCTATGGACTCTCCCTCACCGGATTGCGCTTCTTCACTGTTTACGGGCCCTGGGGAAGGCCCGACATGGCTTACTTTTTCTTCACTAAGTCCATCCTCCAGGGAAAGCCCATTGACGTGTACCAGACGCAGGACGAAAGAGAAGTGGCGCGCGACTTCACTTACATCGACGACGTCGTCAAGGGCTGCCTCGGCGCTCTAGACACGGCGGAGAAGAGCACCGGCGGCGGCGGGAAGAAGCACGGCGCCGCGCAGCTCAGGGTTTACAATCTCGGCAACACCTCGCCGGTGCCGGTGGGGAAACTCGTTTCCGTGTTGGAGACGTTGCTCAGGGTGAAGGCGAAGAAGCACGTGATCAAAATGCCGCGAAACGGCGACGTTCCATTCACGCATGCTAACGTGAGCCTGGCGTGGAGGGACTTCGGGTACAAGCCCACCACTGATCTCGCCACTGGTCTCAGAAAGTTCGTGCAGTGGTACGTTGGGTATTACGGGGTTCGCTTAGGGGTAGAAAAGGAAAAGATTTCGCTTGATTGA
Predicted protein sequences of Glyma05g28510
>Glyma05g28510.1   sequence type=predicted peptide   gene model=Glyma05g28510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSPDTSKTIKLVRNNSYLRRLNISFKILFLLLALLLLYTLSTHHHHLPLSSAWENQVRHSALPRRPNGMSVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNPYYDPSLKRARQHLLAKHRILIIEADLNDAPLLAKLFDVVSFSHVLHLAAQAGVRYAMQNPQSYVASNIAGFVTLLEASKTSNPQPAIVWASSSSVYGLNNESPFSELHRTDQPASLYAATKKAGEAIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKSILQGKPIDVYQTQDEREVARDFTYIDDVVKGCLGALDTAEKSTGGGGKKHGAAQLRVYNLGNTSPVPVGKLVSVLETLLRVKAKKHVIKMPRNGDVPFTHANVSLAWRDFGYKPTTDLATGLRKFVQWYVGYYGVRLGVEKEKISLD*






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