Glyma05g28460 - SoyBase

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Report for Sequence Feature Glyma05g28460

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34264955
stop:	34270029
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13980	AT	Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein \| chr4:8077519-8079247 REVERSE LENGTH=466	SoyBase	E_val: 8.00E-165	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0627	KOG	Heat shock transcription factor	JGI		ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_G7LH28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat stress transcription factor A-5 n=1 Tax=Medicago truncatula RepID=G7LH28_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3S2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3S2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28460

Paralog	Evidence	Comments
Glyma08g11460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g151800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28460

Limit To All Plant Sequences

>Glyma05g28460.1   sequence type=CDS   gene model=Glyma05g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGTGCGCCACAATCCGCCGGTGCCGGAGGTCCGGCGCCGTTCCTTCTGAAGACCTACGACATGGTGGACGATGCCTCCACCAACGACATCGTTTCGTGGAGCTCTACCAACAACAGCTTCGTCGTGTGGAACCCTCCCGAGTTCGCTCGCCTCCTTCTCCCGACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTACGGATTTCGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGATGAGTTTCTGAAAGATCAGAAGCATCTTCTTAAGAATATATATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCAGGTTCACTTGTAGATCCAGAAAGGGCAGCATTTGAGGAAGAAATAGACAAACTTTCCCGTGAGAAAACTTCTCTTGAATCCAATATTTATAACTTCAAACAACATCAGTCAACAGCAAAGCCTAAGCTAGAAGATTTTCTGCAGCGATTAGATGGTATTGAGCAGAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAACATCTTTCACGCAAAATCGAGTCCATGGATTTATCTGCATATAAGAAAAGGCGATTGCCTCAGGTTGATCATGTGCAACCAGTTGCCGAAAGTAGCTTGGTGGACAGTCATAGCAATTTTAGAATGGAATTTGGAAATGTTTTCCATCAAGATTTCTCGAATAAACTTAGACTGGAGTTGTCACCAGCTGTTTCTGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGCCCACAGAAAAAGCTGTCTGAAGTAGAACCAAAAGGAGTGCAGACAAGAACAGCTCTTACATTTGCACCTGAAACATTAGAGCTTGCAGATACTGGGGCTTCTTTTACTTTTAAGATGGATTCATGTTTATCGCGAAAAACAACAACTGCTGAGAGCTCAAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTTTATCCTGCCAACTAAACTTAACTCTGGCATCTTGCCCATTGCAAGTCAACAGAAATTCATACTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGAAAATTGGCGGAATCAAGATTTTTTGCCAATGGTAAAGAATCTGATAGTGGTGTTTCCTCAAACCTAAATGTAGCTGCTGAGGCTACCAATTTAGCTTTGTCACAGGAGGATCCAAGTAACAACCAAGTTAACCCAGCTCCTCCAGACAGGGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATGTCCAACTACCGAGCAAACCCGCATGATGAACAAGACGAAGGGCGGTCAGCTCATGGAATCTCTAGAAACATTAAGAACATGGATCAACTCACACTTTGA

Predicted protein sequences of Glyma05g28460

Limit To All Plant Sequences

>Glyma05g28460.1   sequence type=predicted peptide   gene model=Glyma05g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGAPQSAGAGGPAPFLLKTYDMVDDASTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFLKDQKHLLKNIYRRKPIHSHSHPPGSLVDPERAAFEEEIDKLSREKTSLESNIYNFKQHQSTAKPKLEDFLQRLDGIEQRQKQLLNFFEKALQNPTFVEHLSRKIESMDLSAYKKRRLPQVDHVQPVAESSLVDSHSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGVQTRTALTFAPETLELADTGASFTFKMDSCLSRKTTTAESSKLISLEPSSEEGDSLSCQLNLTLASCPLQVNRNSYSARSPQIDCQEIGKLAESRFFANGKESDSGVSSNLNVAAEATNLALSQEDPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAMSNYRANPHDEQDEGRSAHGISRNIKNMDQLTL*

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