Glyma05g28440 - SoyBase

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Report for Sequence Feature Glyma05g28440

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34253864
stop:	34261584
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21110	AT	Annotation by Michelle Graham. TAIR10: G10 family protein \| chr4:11267673-11268774 FORWARD LENGTH=145	SoyBase	E_val: 1.00E-95	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG3404	KOG	G10 protein/predicted nuclear transcription regulator	JGI		ISS
PTHR19411	Panther	G10 PROTEIN HOMOLOG	JGI		ISS
PF01125	PFAM	G10 protein	JGI		ISS
UniRef100_C6SVT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVT6_SOYBN	SoyBase	E_val: 4.00E-103	ISS
UniRef100_G7LH30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BUD31-like protein n=1 Tax=Medicago truncatula RepID=G7LH30_MEDTR	SoyBase	E_val: 2.00E-102	ISS

Expression Patterns of Glyma05g28440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28440

Paralog	Evidence	Comments
Glyma08g11450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g151700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g28440

Limit To All Plant Sequences

>Glyma05g28440.2   sequence type=transcript   gene model=Glyma05g28440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGAAAATTATGTTTTAGTCTTTAAGTTTTCATTCATCGTCTTACACCCGTGGGGATTATTTCAGTAGCGTGAAACTTCCATAATAACTCAAAATCAGTTCTCTTCTGCCTGCGCTCTTTCGCTTCCTGCGAATCTTTCCGAGAATCGAGTCACAGAGTAGAGCGAAATCGGCGTAGAGATACAAAAATGCCAAAAGTAAAGACAAATCGTGTTAAATACCCAGAGGGCTGGGAATTGATTGAGCCTACACTCCGTGAACTTCAAGCAAAGATGAGGGAAGCTGAGAATGATCCACATGATGGCAAAAGAAAATGTGAGACATTATGGCCAATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTACCATCGGAGGAAGGAAATTTCTAAAGAACTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCGCAATCTAATTGCAAAATGGAAGAAGGTTCTTTGGAGAACAAAAAATCAAGAGGGCCTTTTTTTATTTGTGATCCTCTTATTGGAAGCAGTTGAGGAGGCTTTCATTTGATGTTGTTGGACGCTTTTTTCCACTTTTAAGTCTGCAATCTCTAGGATCCCATCTTCCTCTTGCTCGTCTTCTTCTTGCATTGCCTCCATGTATGCTGCAGTTTCAGCTATTTTCTTCTCATAAGCAGCAATCATTTCTAATTTAACATCCTCCAGCACTTTCTTACAAGGACCCACATCTCCTTTTATTTGAAGTTGATGTCTTTTTGCTCTAGAAATTCCTCCGGTAGACGTTTTGTGACAAAAATCACAGCCTGGTTATGAACGTCTTTGCTGCCTGAGGTGCATGCAGCCACGTGATCACAATTTTGCCACCACTTGTGTTTGCAGAGTTCCCAAGCAACTTAGGGAGGAGAAGGTCATAGAGTGTGTTCACTGTGGGTGCAAGGGTTGTGCAAGTGGGGACTGATTGAATACCGATTCTAGTTTTAGTTGCCAATGGAGGGTTTCTTAGAATTACTTTCTTTGTGCTTTTAGCTTTCTGTTGTCTGAAATCCTCACCATGGGACACCACTTCTCCTGGTTGTATTACTGTCTACTAAATGAGTGCTATATATATTGGGAATATTGGTTTCATATTAGTCATCTGCCTAGTTCAAAATCTGACTGGAGCTTTGTACCTTTACATTGATTAGCCTAATATGGTGTACTTTTGCTCGATACTTCTCAGCTTAAACATTGGGCTTAAAATAATCGAAGGTTAGTGTAAACTTTTAATGCTGCTTTGGTTAAGATTGGAGTCAAGCTAAATATTTTTGTGAGGTAAAGATTGTAAAAGGCAAAGCATTATTCTTAGATGAATATATTTTTGTGTCATCCATCTCCCAGTCAACTCATTTGATGAGTAAATAGAAATTAAAATTTTG

Coding sequences of Glyma05g28440

Limit To All Plant Sequences

>Glyma05g28440.1   sequence type=CDS   gene model=Glyma05g28440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAAGTAAAGACAAATCGTGTTAAATACCCAGAGGGCTGGGAATTGATTGAGCCTACACTCCGTGAACTTCAAGCAAAGATGAGGGAAGCTGAGAATGATCCACATGATGGCAAAAGAAAATGTGAGACATTATGGCCAATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTACCATCGGAGGAAGGAAATTTCTAAAGAACTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCGCAATCTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTCTTTGCTGCCTGAGGTGCATGCAGCCACGTGATCACAATTTTGCCACCACTTGTGTTTGCAGAGTTCCCAAGCAACTTAGGGAGGAGAAGGTCATAGAGTGTGTTCACTGTGGGTGCAAGGGTTGTGCAAGTGGGGACTGA

>Glyma05g28440.2   sequence type=CDS   gene model=Glyma05g28440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAAGTAAAGACAAATCGTGTTAAATACCCAGAGGGCTGGGAATTGATTGAGCCTACACTCCGTGAACTTCAAGCAAAGATGAGGGAAGCTGAGAATGATCCACATGATGGCAAAAGAAAATGTGAGACATTATGGCCAATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTACCATCGGAGGAAGGAAATTTCTAAAGAACTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCGCAATCTAATTGCAAAATGGAAGAAGGTTCTTTGGAGAACAAAAAATCAAGAGGGCCTTTTTTTATTTGTGATCCTCTTATTGGAAGCAGTTGAGGAGGCTTTCATTTGA

Predicted protein sequences of Glyma05g28440

Limit To All Plant Sequences

>Glyma05g28440.1   sequence type=predicted peptide   gene model=Glyma05g28440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKVKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFATTCVCRVPKQLREEKVIECVHCGCKGCASGD*

>Glyma05g28440.2   sequence type=predicted peptide   gene model=Glyma05g28440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKVKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELYEFCLDQGYADRNLIAKWKKVLWRTKNQEGLFLFVILLLEAVEEAFI*

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