Glyma05g28350 - SoyBase

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Report for Sequence Feature Glyma05g28350

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34187464
stop:	34191720
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23750	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr3:8558332-8561263 FORWARD LENGTH=928	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF467	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C1FY61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhg4-like receptor kinase II n=1 Tax=Glycine max RepID=C1FY61_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C1FY61	UniRef	Annotation by Michelle Graham. Best UniRef hit: Rhg4-like receptor kinase II n=1 Tax=Glycine max RepID=C1FY61_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28350

Paralog	Evidence	Comments
Glyma08g11350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g150800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28350

Limit To All Plant Sequences

>Glyma05g28350.1   sequence type=CDS   gene model=Glyma05g28350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTCCCCAAAACCCTACTTTCTCTCTCCCTTCTCTTCGCGATCGCGATCACCGCAGTAACCGGCGATGACGCGGCGGTGATGTCGAATTTTCTCATATCCCTCACTCCACCGCCCTCCGGCTGGTCTCAAACAACCCCATTCTGCCAATGGAAGGGAATCCAATGCGATTCTTCGAGGCACGTGACCAGCATAAGCCTCGCTTCGCAGTCCCTCACCGGAACACTCCCCTCGGATCTCAATTCCCTCTCTCAACTCCGCACTCTCTCTCTCCAAGACAATTCTCTCTCCGGCACCCTCCCTTCCCTCTCCAACCTCTCATTCCTCCAAACCGCGTACTTAAACCGCAACAACTTCACCTCCGTGCCCCCCTCCGCCTTCTCCTCCCTAACCTCCCTCCAAACCCTCAGCCTCGGCTCCAACCCTACCCTCCAACCCTGGTCCTTCCCCACCGACCTCACTTCCTCCGTTAACCTAATCGACCTCGACCTCGCCACCGTAACCCTCACCGGTCCCTTACCAGACATTTTCGACAAATTCACCTCTCTTCAACACCTTCGCCTCTCTTACAACAACCTCACCGGTAATTTACCCGCCTCTTTCGCCGTCGCCGACAATATCGCAACCCTCTGGCTCAACAACCAGGCCGCCGGCTTGTCCGGTACCCTCCAGGTCCTCTCCAACATGACAGCATTAAAGCAGGCCTGGCTCAATAAGAATCAGTTCACTGGTTCCTTACCGGATTTGTCGCAATGCAAGGCTTTGTCTGACTTGCAGCTTAGGGATAACCAGTTAACTGGTGTGGTTCCCGCTTCCTTGACGAGTCTTCCGAGTTTGAAGAAAGTTTCTCTGGATAACAATGAGCTTCAGGGGCCCGTGCCCGTGTTTGGGAAAGGTGTGAATTTTACTCTCGATGGGATTAATAGCTTTTGTCTTGACACTCCTGGGAATTGTGATCCCAGGGTGATGGTTTTGCTGCGGATTGCCGAGGCGTTCGGTTATCCGATTCGGTTGGCGGAATCGTGGAAAGGGAATGATCCTTGTGATGGTTGGAACTATGTTGTGTGTGCTGCCGGGAAGATTATCACTGTCAATTTCGAGAAACAGGGTTTGCAGGGTACCATCTCCCCTGCATTTGCCAATTTGACTGACTTGAGGAGCTTGTTTCTCAATGGGAATAATTTGACTGGTTCTATACCTGAGAGTTTGACTACTTTGTCTCAGCTTCAGACTCTTGATGTGTCTGATAACAACCTCTCTGGATTGGTTCCCAAGTTCCCGCCAAAGGTGAAGTTGGTGACTGCGGGAAATGCTTTGCTTGGGAAAGCTCTTAGTCCTGGAGGTGGACCAAATGGAACTACTCCTTCAGGGTCTTCGACTGGTGGAAGTGGCAGTGAATCCGCAAAGGGTAGTTCTTTGTTGTCGCCGGGTTGGATTGCTGGTATAGTTGTTATTGTGTTGTTTTTTATTGCAGTGGTGTTGTTTGTGTCTTGGAAGTGTTTTGTCAACAGGCGGCAGGGGAAGTTCAGTAGGGTTAATGGTCGTGAAAATGGGAAAGGAATTTTTAAACCTGATGCTGCCCATGTTTCTAATGGATATGGTGGTGTTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTCAGGCTTTAGATGGTCCAACGTTTTCGATCCAAGTTCTTCAACAAGTGACGAATAATTTCAGCGAGGAGAACATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGCAGTTGCATGATGGAACAAAAATTGCTGTCAAGAGGATGGAATCTGTTGCAATGGGTAACAAAGGACTGAAAGAGTTCGAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTTTAGGGTATTGCATCAATGGCATTGAAAGGCTTTTGGTCTATGAGTATATGCCTCAAGGTACGTTAACACAGCACCTGTTTGAATGGCAGGAGCAAGGCTATGTTCCTTTGACTTGGAAACAAAGGGTAGTAATAGCTTTGGATGTAGCGCGGGGGGTGGAATACTTGCACAGTTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTACTAGGTGATGACATGAGAGCAAAGGTTGCTGATTTTGGTTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATATTTATGCATTTGGAATAGTTTTGATGGAACTTATCACCGGTAGAAAGGCATTGGATGATACTGTGCCTGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGGGTACTCATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAACTCTCAATCCTGACGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCGGATATGGGCCATGCAGTGAACGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTTCTAGCCACGACGAAGAAGAGGACGGCTCTGGTGGTGACCTGCAAATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCAATGAAGGCACTTCCTCAATATTTAATGACATTTCCATCTCACAAACCCAATCAAGCATCCCCTGTAAACCTGTTGGATTTGCAGACACCTTTGATTCAATGGATTGCCGGTAG

Predicted protein sequences of Glyma05g28350

Limit To All Plant Sequences

>Glyma05g28350.1   sequence type=predicted peptide   gene model=Glyma05g28350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLPKTLLSLSLLFAIAITAVTGDDAAVMSNFLISLTPPPSGWSQTTPFCQWKGIQCDSSRHVTSISLASQSLTGTLPSDLNSLSQLRTLSLQDNSLSGTLPSLSNLSFLQTAYLNRNNFTSVPPSAFSSLTSLQTLSLGSNPTLQPWSFPTDLTSSVNLIDLDLATVTLTGPLPDIFDKFTSLQHLRLSYNNLTGNLPASFAVADNIATLWLNNQAAGLSGTLQVLSNMTALKQAWLNKNQFTGSLPDLSQCKALSDLQLRDNQLTGVVPASLTSLPSLKKVSLDNNELQGPVPVFGKGVNFTLDGINSFCLDTPGNCDPRVMVLLRIAEAFGYPIRLAESWKGNDPCDGWNYVVCAAGKIITVNFEKQGLQGTISPAFANLTDLRSLFLNGNNLTGSIPESLTTLSQLQTLDVSDNNLSGLVPKFPPKVKLVTAGNALLGKALSPGGGPNGTTPSGSSTGGSGSESAKGSSLLSPGWIAGIVVIVLFFIAVVLFVSWKCFVNRRQGKFSRVNGRENGKGIFKPDAAHVSNGYGGVPSELQSQSSGDRSDLQALDGPTFSIQVLQQVTNNFSEENILGRGGFGVVYKGQLHDGTKIAVKRMESVAMGNKGLKEFEAEIAVLSKVRHRHLVALLGYCINGIERLLVYEYMPQGTLTQHLFEWQEQGYVPLTWKQRVVIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDIYAFGIVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQTLNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPSSHDEEEDGSGGDLQMSLPQALRRWQANEGTSSIFNDISISQTQSSIPCKPVGFADTFDSMDCR*

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