Glyma05g28340 - SoyBase

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Report for Sequence Feature Glyma05g28340

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34177435
stop:	34179216
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15550	AT	Annotation by Michelle Graham. TAIR10: indole-3-acetate beta-D-glucosyltransferase \| chr4:8877877-8879301 REVERSE LENGTH=474	SoyBase	E_val: 1.00E-137	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_G7LH44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetate beta-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7LH44_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3Q9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K3Q9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28340

Paralog	Evidence	Comments
Glyma08g11340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g150700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28340

Limit To All Plant Sequences

>Glyma05g28340.1   sequence type=CDS   gene model=Glyma05g28340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAAAAAAAAAAGATTTTGTCTAAGTGCGAATTCACAGCAAAAGAGCCTAGAGAAGCCAGTTCCAGCGCCACCATGCTCCACCACCGCTTCCTCCTCGTAATTTACCCCGGACAAGGCCAAATAAACCCCGCTCTTCAGTTTGCGAAGCGACTCACTGCCATGGGTGCACGTGTCACTATTCCCATCACTCTCGACATGCACCGCCGCATGACCAACACAACCGCCGTCCCCGGCCTCTCCCTCGCCCCCTTCTCCGACGGCTACGACGACGGCTTCCACGCCATCCGCGGCACCGACTCCGATTACAACCTCTACGCCTCGGAACTCAAGCGCCGTGCCTCGGTGTTCGTGTCCAACCTCATACTCTCCAGCGCCAACGAGGGCCACCCTTTCACTTGCTTACTCTACACCTTGCTCGTTCCGTGGGCCCCACAGGTGGCGCGTGGACTCAACCTCCCAACAGCTATGCTCTGGATCCAACCCGCCACGGTGCTGGATATCCTCTACCACTACTTTCACGGCTACGCTGATTACATCAACGACGAAACCAAAGAGAACATAGTGCTTCCGGGATTGTCGTTTTCGCTTTCACCCCGTGACATACCATCGTTTTTACTGACGTCGAAACCGAGTTTATTGTCGTTCGTCTTTCCCTTGTTTGAAGAGCAGATCAAACAGCTTGACCTGGAAGCTAACCCTAAGGTGCTGGTGAATACTTTTGAAGCTTTGGAAGAAGAGGCGTTGAGGGCCGTTGATAAGCTCAACATGATCCCCATCGGGCCGTTGATTCCTACTGCGTTCTTGGGTGGGAAGGACCCTGAAGATACTTCCTTTGGTGGTGACTTGTTACAAGTCTCAAATGGTTATGTTGAGTGGCTTGACTCAAAGGAAGACAAGTCTGTGGTTTACGTTTCATTTGGGAGCTACTTTGAGTTGTCTAAGAGACAAACTGAGGAAATTGCACGTGCGTTGTTAGGTTGTAGTTTTCCGTTCTTGTGGGTGATTAGAGTGAAAGAGGAAGAGAAGGAGGAGGAGGAGGAGCTGTGTTTTAGAGAGGAATTGGAAGGGAAGGGGAAGTTGGTGAAATGGTGTTCTCAGGTGGAGGTTCTGTCGCATGGTTCCGTGGGTTGTTTTGTGACACACTGTGGTTGGAATTCGACCATGGAAAGCTTGGTTTCGGGGGTGCCCATGGTGGCCTTTCCTCAGTGGTCGGACCAAAAGACAAACGCGAAACTGATAGAAGATGTGTGGAAGATAGGAGTGAGGGTGGAAAATGATGGGGATGGAATAGTAGAAAAGGAAGAAATTAGGAAGTGTGTGGAAGAGGTGATGGGGAGTGGAGAGTTGAGAAGGAACGCAGAGAAATGGAAGGGTTTGGCAAGGGAGGCAGCGAAGGAAGGTGGTCCTTCAGAGAGGAATCTCAAGGCGTTTCTTGATGCCATGGCGGCGTTGCAGTTCTAA

Predicted protein sequences of Glyma05g28340

Limit To All Plant Sequences

>Glyma05g28340.1   sequence type=predicted peptide   gene model=Glyma05g28340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNEKKKILSKCEFTAKEPREASSSATMLHHRFLLVIYPGQGQINPALQFAKRLTAMGARVTIPITLDMHRRMTNTTAVPGLSLAPFSDGYDDGFHAIRGTDSDYNLYASELKRRASVFVSNLILSSANEGHPFTCLLYTLLVPWAPQVARGLNLPTAMLWIQPATVLDILYHYFHGYADYINDETKENIVLPGLSFSLSPRDIPSFLLTSKPSLLSFVFPLFEEQIKQLDLEANPKVLVNTFEALEEEALRAVDKLNMIPIGPLIPTAFLGGKDPEDTSFGGDLLQVSNGYVEWLDSKEDKSVVYVSFGSYFELSKRQTEEIARALLGCSFPFLWVIRVKEEEKEEEEELCFREELEGKGKLVKWCSQVEVLSHGSVGCFVTHCGWNSTMESLVSGVPMVAFPQWSDQKTNAKLIEDVWKIGVRVENDGDGIVEKEEIRKCVEEVMGSGELRRNAEKWKGLAREAAKEGGPSERNLKAFLDAMAALQF*

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