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Report for Sequence Feature Glyma05g28300

Feature Type:gene_model
Chromosome:Gm05
Start:34147086
stop:34152659
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g28300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23710AT Annotation by Michelle Graham. TAIR10: Tic22-like family protein | chr3:8534061-8536148 FORWARD LENGTH=313 SoyBaseE_val: 3.00E-91ISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
PF04278PFAM Tic22-like family JGI ISS
UniRef100_F4J469UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein TIC 22-like, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=TI22L_ARATH SoyBaseE_val: 1.00E-88ISS
UniRef100_I1K3Q6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3Q6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g28300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28300
ParalogEvidenceComments
Glyma08g11290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g150300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g28300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g28300
>Glyma05g28300.1   sequence type=CDS   gene model=Glyma05g28300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAACTTTGACGGCTTCCAGAAGGCTCTGGCGGAGTTTCAGGGCCGCTGCTCCACGCTGCTGGGCAGCCTGACCCGTCTCCAGCCCAACCGCGCGAGGCCACCATGGGCTCGGATAGCCCAGCCCTGGGGAGGCAGGCCCATGGCCATGACGGTGGAGGCAATCGAGGAGCGCTTAGAGGGAATTCCCGTTTACGCCCTCAGCAACGCTTCCGAGGAGTTTCTCTTGGTCTCGGGCTCTTCCTCCGGGAAAAACCTTGGCCTCTTCTGCTTCAACAAGGACGACGCCGAGGCTCTCCTCAACCAGGTTACGCTTATCGACCCCCACGCTCGCCAGGGCTCCAAAGTTGTCCCCGTTGCTTTGAACAAGGTGTTTCAGCTCAAGGTGAACGGCGTTGCGTTTAGATTGATACCTGAGTTCTCTCAAGTAAAGAATGCCCTGCAAGAGAGGGAAAAATCTGGCTTTGCTTCCAGTGGCTTTTCTGGTGTTCCAGTTTTCCAGTCCAGAAGTCTGATATTGAAGAGCCAAAATAAGAGATTTCGTCCACTTTTCTTCAGAAAGGAGGACTTGGAAAATACACTTAAATCGGCAGCCCGTGAGCAGAACAAATTAAATCCCACTATGAGAAAAGGAGATATCCAGGTTGCCACTCTAGAGGATGTAATAAAAGAAATGAAGGAAAATTCTACATCGAACTGGGATGATGTTATTTTTATACCTCCTGGATTTGATGTTTCAGACGACTCCAATGAGCAGTAG
Predicted protein sequences of Glyma05g28300
>Glyma05g28300.1   sequence type=predicted peptide   gene model=Glyma05g28300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNFDGFQKALAEFQGRCSTLLGSLTRLQPNRARPPWARIAQPWGGRPMAMTVEAIEERLEGIPVYALSNASEEFLLVSGSSSGKNLGLFCFNKDDAEALLNQVTLIDPHARQGSKVVPVALNKVFQLKVNGVAFRLIPEFSQVKNALQEREKSGFASSGFSGVPVFQSRSLILKSQNKRFRPLFFRKEDLENTLKSAAREQNKLNPTMRKGDIQVATLEDVIKEMKENSTSNWDDVIFIPPGFDVSDDSNEQ*






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