SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14150 | AT | Annotation by Michelle Graham. TAIR10: phragmoplast-associated kinesin-related protein 1 | chr4:8158645-8165008 REVERSE LENGTH=1292 | SoyBase | E_val: 0 | ISS |
| GO:0000087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear division | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0000914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phragmoplast assembly | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0055046 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microgametogenesis | SoyBase | N/A | ISS |
| GO:0080175 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phragmoplast microtubule organization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0003777 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008574 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: plus-end-directed microtubule motor activity | SoyBase | N/A | ISS |
| KOG4280 | KOG | Kinesin-like protein | JGI | ISS | |
| PTHR24115 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24115:SF82 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00225 | PFAM | Kinesin motor domain | JGI | ISS | |
| PF06548 | PFAM | Kinesin-related | JGI | ISS | |
| UniRef100_G7JBC6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-like protein KIF15 n=1 Tax=Medicago truncatula RepID=G7JBC6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K3Q0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3Q0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g28240 not represented in the dataset |
Glyma05g28240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g11200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g149700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g28240.1 sequence type=CDS gene model=Glyma05g28240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCCAAAAAATCCAATCTTTCGGTGTCGGGACACTCCTTCCGCACATGCTTTCAGAAAACCCAGACCCACGCGAAAACAAAAATCCAAGGACAAAGAAAACCATCCTCCTCCTTTCAAGTCCCCCTTGCCCCCAAAACCTCCCAACCCTAACCCTCTTAAGCGCAAGCTTTCCGACCATTCCGTTCCCCCCACCCCCGGTTCCGGCGTCAAGGTTATTGTGAGAATGAGGCCTGCATGCGATGACGGGGACGAGGGAGATTCCATAGTTCAGAGGATTTCCAGTGATTCCTTGTCCATCAACGGTCAGAGCTTCACATTTGATTCCGTTGCTCACAGCAATGCTACTCAGTTGGATATTTTTGAGCTTGTTGGGGCGCCTCTTGTAGAGAATTGCTTGGCTGGATTTAATAGTTCTATATTTGCATATGGGCAGACTGGGAGTGGGAAAACTTATACCATGTGGGGTCCTGCCAATGCTTTGTCAGATGGCAATTCAGCAAGTGATCAACAAGGCCTTGCGCCTCGTGTTTTTGAAAGACTCTTTGCCTGCATAAATGAGGAGCAAATTAAGCATTCTGACAAGCAACTCAAGTATCAGTGCCACTGCTCTTTTCTCGAGATATACAACGAGCAAATAGCAGATCTATTAGATCCAAATCAAAGAAACCTACAGATTAGAGAAGATGTCAAATCTGGTGTCTATGTTGAAAATCTTACAGAGGAGCTAGTGTGTACGAAGAAAGATGTGACTCAGCTTTTGATAAAGGGTTTGTTAAACAGAAGAATTGGTGCAACCAGTATAAATTCTGAAAGTTCACGTTCTCATACTGTTTTTACTTGTGTGGTTGAATCTCGATGCAAGAGTACTGCAAATGGTGTAAGCAGATTTAGAACAAGTAAAATAAATCTTGTTGATCTAGCTGGGTCAGAACGACAAAAATTAACGGGTGCAGCAGGAGACCGTTTAAAGGAAGCTGGCAATATTAATAGATCCCTTTCACAGCTTGGGAATTTGATAAAAATTCTAGCTGAAGTTTCTCAGACAGGAAAGCCGCGACATATACCATATAGAGACTCCAGGTTAACATTTTTATTGCAGGAGTCTCTTGGTGGAAATGCAAAATTAGCTTTGGTTTGTGCTATTTCCCCAGCACAAAGTTGTAAGAGTGAAACTTTTAGTACATTGAGATTTGCACAATGTGTAAAGGATATCAAGAATAAAGCAGTTGTCAATGAAGTAATGCACGATGATGTGAATCAATTACGAGATGTGATATGCCAACTCAGGGATGAACTGCATCGAATTAAAGCAAATGGTTACAGTCCAAGTGATGGAAGTCGAGGTCATTCAGCAGCTTTGATCAGAAGAAGTTTGAATTTGTTGAAGCCTACCCTCAATCGCCCATTATCACTACCTCATGTTGATGAGGATGGTGATGAGGAGATGGAGATTGATGAGGAAGGTGTCGAGGATCATGCTGTAGTTCTCCACAACTCAAATGGAGGTTTTGCTGGTTTTTCAGCCCCTAATGGATCTATTGGTTCTCCTAGTGCTGCAATGAATGGTGACAGCCTTGCTGGCGGCATGGTTAAATGCAAAACATCCCCCATCCTCAAATCCCCTCCTTCCAGCCTTTCACCAACAATCAGCAGCAGCAGGAAAAGTTTGAGGACCTCATTAAAGCAGTCTCCTTCTGAGAATAATATTCATGGTGAAAGTGATTTAGGCACAAACACCGTTAACCAGAAATGCTTGTCTACTGCTCTCTCTAGCCAGACAGCTCCAAATTTCGTAACTAAAACTGAAAATTTAGCAGTAAGCATCCGCCATGGTCTTGAAATTATTGATAGCCACCATCATGGTACATCGTTATCGAGTCTCTCATTGAGACCCAAAGATTCCAGGCTAATTATTCCTGTGGAAAAAGTTGATGTCGGAGTCCAGACTTTTCTTGATGATAATGCCAAAAAGGAAGATTATGCTATGCTTACCTGTAATAACTGTAAAAGCAGAATGCAGCTTGATGTCAATGAGATTGACAATAGCTCAAATGTGCAGCAGTTACTGATTGATTGCCCGCAGTCAACTGGTAAACCAAAGAAGCAAATTCTGAAAGCAGTAGAGAAGGTTTTGGCAGGATCGATAAGGAGAGAAATGGCACTAGAAGAGTTTTGTGCAAAGCAGACTTCTGATATAATGCAGCTCAATTGCTTGTTGCAAAAGTACAGGCAAGAGAGGGAATGCAATGCCACAATAACACAGATAAGAGAAGATAAAATTCTACGCCTTCAGAGCCTTATTGATGGTGTTTTATCCACCAAGGAGTCCATGGATGAAGAGCTTGTGTCCCTCACACATGAAAACAAGCTTTTAAAGGAGAACCATGAGCATCATTTAGAAGTTCTGAAGATGAAGATAGAGTTAAAAAGAGTACAAGATGAGTTACAAGAGTATCAGAATTTTTACCAATTTGGGGAGAGGGAAGTGTTGATGGAAGAGATATGTAGTTTAAGAAACCAGCTTCACTTTTATGTTGACTCTTCATCCACAGCCGCAACAAAGCAATATCCTCCATTGCAATTGACTTATTCATCTGAACCTAGTTTGGAAGCAAACCTCACTGCCATTCCAGATTTAACAGAGGCTAGCACTAAGGCAAACGCAAATCCAGAATCAACTGAAGACAGTGCCAAAGTAAAACTTGAGCAGGAAAAAAGTCAATGGACCGAGGCAGAAAGCAGGTGGATTTCTCTAACTGAAAAACTGAGAGCTGAACTTGAAACTAGCAGGTTACTAGCTGAAAAGAGGAAGCAGGAACTAGATACTGAGAGGAAGTGTGCGGAGGAACTGAATGAAACAATGCAAATGGCTATAGAAGGCCATGCACGAATTTTAGAACAGTATGCTGATTTAGAAGAGAAACACATCCAATTGCTTGACAGGCATAGAAAGATCCAGGATGGAATTGATGATGTCAAGGAAGCAGCTTCCAGAGCAGCAGGAGTAAGAGGTGCAGACTCTAAATTCATAAATGCCCTTGCAGCAGAAATTTCAGCATTAAAAGCAGAAAAAGAAAAAGAAATGGAAATCCTAAGAGATGAAAATAGAGGACTTCGAGCTCAACTGAAGGATACTGCTGAAGCAGTGCAAGCTGCAGGTGAACTTCTTGTGCAACTTAATGAAGCAGAAGAAGCTGTCATTACCGCACAGAAGCGGGCGATGGATGCAGAGCAGGAAGCTGCAAAGGCCTACAAACAAATTGATAAATTGAAGAAGAAACATGACAAGGAGATTAGCACACTTAATAAGCTACTTGCCAAAACACATTTGCCTAATGAAGAAATACGACCTACTTTAGATGACCTTGTAATGCCTACTTGTGATGACACCAAGGTGCCGAACAATGTTAATGGTCAATTTGAGTTATTTTGTAGCGAAGAGGATATTGAACTAGCAAATTTGGCAGACCAATCATGGTTGTCTTCTTATGACACATGCAACATATAG
>Glyma05g28240.1 sequence type=predicted peptide gene model=Glyma05g28240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPKNPIFRCRDTPSAHAFRKPRPTRKQKSKDKENHPPPFKSPLPPKPPNPNPLKRKLSDHSVPPTPGSGVKVIVRMRPACDDGDEGDSIVQRISSDSLSINGQSFTFDSVAHSNATQLDIFELVGAPLVENCLAGFNSSIFAYGQTGSGKTYTMWGPANALSDGNSASDQQGLAPRVFERLFACINEEQIKHSDKQLKYQCHCSFLEIYNEQIADLLDPNQRNLQIREDVKSGVYVENLTEELVCTKKDVTQLLIKGLLNRRIGATSINSESSRSHTVFTCVVESRCKSTANGVSRFRTSKINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLIKILAEVSQTGKPRHIPYRDSRLTFLLQESLGGNAKLALVCAISPAQSCKSETFSTLRFAQCVKDIKNKAVVNEVMHDDVNQLRDVICQLRDELHRIKANGYSPSDGSRGHSAALIRRSLNLLKPTLNRPLSLPHVDEDGDEEMEIDEEGVEDHAVVLHNSNGGFAGFSAPNGSIGSPSAAMNGDSLAGGMVKCKTSPILKSPPSSLSPTISSSRKSLRTSLKQSPSENNIHGESDLGTNTVNQKCLSTALSSQTAPNFVTKTENLAVSIRHGLEIIDSHHHGTSLSSLSLRPKDSRLIIPVEKVDVGVQTFLDDNAKKEDYAMLTCNNCKSRMQLDVNEIDNSSNVQQLLIDCPQSTGKPKKQILKAVEKVLAGSIRREMALEEFCAKQTSDIMQLNCLLQKYRQERECNATITQIREDKILRLQSLIDGVLSTKESMDEELVSLTHENKLLKENHEHHLEVLKMKIELKRVQDELQEYQNFYQFGEREVLMEEICSLRNQLHFYVDSSSTAATKQYPPLQLTYSSEPSLEANLTAIPDLTEASTKANANPESTEDSAKVKLEQEKSQWTEAESRWISLTEKLRAELETSRLLAEKRKQELDTERKCAEELNETMQMAIEGHARILEQYADLEEKHIQLLDRHRKIQDGIDDVKEAASRAAGVRGADSKFINALAAEISALKAEKEKEMEILRDENRGLRAQLKDTAEAVQAAGELLVQLNEAEEAVITAQKRAMDAEQEAAKAYKQIDKLKKKHDKEISTLNKLLAKTHLPNEEIRPTLDDLVMPTCDDTKVPNNVNGQFELFCSEEDIELANLADQSWLSSYDTCNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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