SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34880 | AT | Annotation by Michelle Graham. TAIR10: Amidase family protein | chr4:16615549-16617424 FORWARD LENGTH=466 | SoyBase | E_val: 1.00E-155 | ISS |
| GO:0019256 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acrylonitrile catabolic process | SoyBase | N/A | ISS |
| GO:0019330 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aldoxime metabolic process | SoyBase | N/A | ISS |
| GO:0004040 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amidase activity | SoyBase | N/A | ISS |
| GO:0016884 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor | SoyBase | N/A | ISS |
| KOG1211 | KOG | Amidases | JGI | ISS | |
| PTHR11895 | Panther | AMIDASE | JGI | ISS | |
| PTHR11895:SF8 | Panther | GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE, SUBUNITA | JGI | ISS | |
| PF01425 | PFAM | Amidase | JGI | ISS | |
| UniRef100_G7LHB5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Medicago truncatula RepID=G7LHB5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023396D5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023396D5 related cluster n=1 Tax=unknown RepID=UPI00023396D5 | SoyBase | E_val: 0 | ISS |
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Glyma05g28220 not represented in the dataset |
Glyma05g28220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g11171 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g149500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g28220.2 sequence type=CDS gene model=Glyma05g28220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTGCAACACAGTAGGATGTTTCTCTTTGTTTTTTCAATTCATTCTTTTAATCCCTCTAGTCACTTTCTCTTCCTTATTTCTACCAACTACCACGGCCAAGGGATTCTCAATTGAAGAGGCAACTGTCTATGATCTCCAACTTGCTTTCCGTAGAAACCAATTAACCTCTAGGCAACTAGTTGAGTTCTACCACAAACAAATACAAACCCAAAACCCAGTTCTGAGAGGGGTGTTGGAGTTAAACCCAGATGCACTAGCACAAGCTGACAAAGCTGACCATGAGAGAAAGGCTAATGCACCAGGGACTCTTCCAGCATTGCATGGAATACCCATTTTGGTTAAGGACAACATTGCTACCAAGGATAAGATGAACACCACTGCAGGCTCTTTTGCACTTCTTGGCTCTGTGGTGCCTAGAGATGCAGGTGTAGTTACCAGGTTAAGAGAAGCTGGTGCTATCATTTTAGGCAAGGCCACCCTGAGTGAATGGTCACATTATAGGTCGAATGATGCACCCAGTGGTTGGAATGGCAGAGGTGGAGAAGGAAAGAATCCATACACAATGGATGGTCCCTGTGGATCTAGTAGCGGATCAGCAATATCAGTGGCCGCAAATTTGGTGGCAGTGTCACTTGGTAGTGAGACTGATGGGTCCATTTTATGCCCTTCAGGTTCTAATTCAGTAGTGGGCATTAAACCAACAGTTGGCCTCACTAGTAGAGCAGGGGTAGTTCCCATCACCCCATTACAGGACACAGTTGGACCAATTTGCAGGACTGTATCAGATGCTGCTCTTGTTCTTGAAACCATTGCAGGCATCGACGTCAATGATAACGCAACAATCAAAGCATCAAAGTATCTCCCAAGAGGTGGCTATGCTCAATTTCTAAAGAAAGATGGACTGAGAGGAAAGAGATTAGGTGTTGTAAGAACATTCTACGGTTTTGGAAATGACACTTTTATGCATGATACTTTCGAACTGCACCTGAAAACAATAAGGCAAAAAGGAGCAGTTTTGGTTGACAATTTGGAGATAAACAACATTCAGGAAATCTTTAATGACCAAAGTGAAGACATTGCTATGGCATATGAATTCAAATTATCCTTGAACGCATACCTCAGAGACTTAGTTGCTTCCCCAGTGAGAAGCTTGGCCGATGTGATAGCCTTCAACAAGAAACACCCAAAATTGGTTACTCAAAAGACAAATGGAGTTAGGGAACTGAAGGAAGCAGTGTTAAACATGGCAAGATTGTCACATAATGGATTTGAGAAATTAATGATAACAAAAAAACTTGACGCGGTGGTAGTACCCTTTTCATTCTTTGTTAGTATACTTGCAAGGGGAGGTTATCCTGGAGTAACTGTTCCAGCGGGATATGAAAAGGGTGCACCATTTGGAATTATCTTTGGAGGTTTGAAAGGCTCAGAACCAAAGCTCATCGAAATTGCATATTCCTTTGAGCAAGCTACTTTGATCAGGAAGCCCCCACCACTCCGAAAGTTAAAGGTTTAA
>Glyma05g28220.2 sequence type=predicted peptide gene model=Glyma05g28220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACNTVGCFSLFFQFILLIPLVTFSSLFLPTTTAKGFSIEEATVYDLQLAFRRNQLTSRQLVEFYHKQIQTQNPVLRGVLELNPDALAQADKADHERKANAPGTLPALHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAGVVTRLREAGAIILGKATLSEWSHYRSNDAPSGWNGRGGEGKNPYTMDGPCGSSSGSAISVAANLVAVSLGSETDGSILCPSGSNSVVGIKPTVGLTSRAGVVPITPLQDTVGPICRTVSDAALVLETIAGIDVNDNATIKASKYLPRGGYAQFLKKDGLRGKRLGVVRTFYGFGNDTFMHDTFELHLKTIRQKGAVLVDNLEINNIQEIFNDQSEDIAMAYEFKLSLNAYLRDLVASPVRSLADVIAFNKKHPKLVTQKTNGVRELKEAVLNMARLSHNGFEKLMITKKLDAVVVPFSFFVSILARGGYPGVTVPAGYEKGAPFGIIFGGLKGSEPKLIEIAYSFEQATLIRKPPPLRKLKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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