Glyma05g28180 - SoyBase

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Report for Sequence Feature Glyma05g28180

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34077236
stop:	34083276
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14780	AT	Annotation by Michelle Graham. TAIR10: MAC/Perforin domain-containing protein \| chr1:5091020-5093873 FORWARD LENGTH=627	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR19324	Panther	COMPLEMENT COMPONENT C6-9	JGI		ISS
PTHR19324:SF4	Panther	COMPLEMENT COMPONENT C6	JGI		ISS
PF01823	PFAM	MAC/Perforin domain	JGI		ISS
UniRef100_B6SXM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MAC/Perforin domain containing protein n=1 Tax=Zea mays RepID=B6SXM9_MAIZE	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339DE0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339DE0 related cluster n=1 Tax=unknown RepID=UPI0002339DE0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g28180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28180

Paralog	Evidence	Comments
Glyma08g11150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g149200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g28180

Limit To All Plant Sequences

>Glyma05g28180.2   sequence type=transcript   gene model=Glyma05g28180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTCAACCCGTTACACTTGCATTACATAGCAGCTATAGCTATTTTAGCTATTTCCTCTCTTCTCTTCCAAACGAACCAAACCAAAGTACTCTTTTTTATCTTCCCTCATTAAAAGCTGCGTAACGTTCACTGATCCCATCTTCTTCCCCGAACCTTCAATTCACCAAAGCCAACTTCTTTTCTGTTTTGGCCCTCACCCCACATGGCATAGCTAACCCATTTCAATTGGGGTTGGTTGGCACCGTCCTAACCTTAACCAAAGCCAAAACCTTCTCTCTCTCTCTCTCTCTCTCTGGGGTTTCTTTTTTGGAATCCCTGAACTGAATTTGCGTTGTGAAGATGGCGGCGGAAAAGGTTGTTGAGATGGTGGCATTGGAGTCTTTGGGAAAAGGGTTCGATTTGGCCAGCGATTTTCGGTTGCGGTTCGCAAAGGGAATTCATGGAGAGAGGTTGGTGGTGCTTGATGAACAGAACAAGAGGGATATTTTGATTCCTGGAACTGGAGGAGTTACCATTAAAGGGGTTTCTGAGGATATTCGTTGTGATAAAGGGGATAGAATACGCTTCAAGTCTGATGTACTTGAATTCAACCAGATGTCTGAGTTGCTTAATCAGAAATCAGCAGTGCAAGGGAAAGTTCCTTCTGGCTATTTTAATGCGCTCTTTGATTTGAGTGGGGATTGGTTTCGTGATGCTGCTGACACCAAGTACCTTGCTTTTGATGGGTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCTCCACTCATACTGCAAGAGGAGGTTAAGAAGTCTGTTCCGGCTCAGTGGGATCCGGCTTCGTTGTCTAGGCAGGTTCATCCAGACATATGGTACACACATAATAGTAGGTATGGCTGTAGGAGGTCAAGATGTAATATGTGTCAAACAAAAACATTCTTCAAAGATTCCTCCTGGTGATCTCAGAAGACATTTAGAGGATCTTGGAGATTTTTTATTCTCAGATGTCAGAAGCCCTTCTTTACTACAGAGGAAGATAGCAGATGGAAAACAGAAGATCCCCGAGGTCTTTAACCGTGTGATGCAATCAAACACAATGCAGTTCACTAGTATTTCAGAAACATCAAGCAAGGATGGCCTCACTATTATTTGCTCAAAAAGAGGAGGAGATATGTTCAAGCACAGTCACTCAATTTGGCTTCAGACAGTGCCGTCTAACCCTGAAGCAATCCTCTTCAAGTTTGTTCCAATTTCCTCTCTTCTGACAGGAATTCCTGGAAGTGGATATCTTAGTCATGCAATCAATCTGTATCTACGCTATAAGCCTTCTCCTGGAGATTTACAGTACTTTCTGGAGTTTCAAATTCCAAGGCAATGGGCACCCATGTTTTGCGAGCTGCCTCTCAGGCATCAGAATAGAAAGACTGCTTCTCCTTCCCTGCAATTTAGTTTCATGGGTCCAAAGCTTCATATAATCTCTACACAGGTGGTAAGTGAACAAAAACCTGTGGTTGGCATGCGCATGTACTTGGAGGGCAGGAAATGTGACAGACTTGCTTTACATATAAATCATCTTTCAAGCCTCCCAAATAAAATGATCCTCTCTTCAGGAACCTCAACCTTGAGTACACCATCGATGTGGCGAGGATCTGATGATAATGAATCCAGTGATCAATTTCTGGAACGAATCAGATGGAAGAGATTCTCAAATGTGTGCACAGCAGTGGTTAAGCATGATCCTAACTGGTTGAATAATTCTGGAGGTGTTTATATTGTAACAGGTGCACAACTCCTTAGCAAAGGGAGCTGGCCAAGGAATGTGCTTCATCTGCGGCTTCTCTTTGCTCATACACCTAATTGCAGTATCCGGAAGTCAGAGTGGACTGCTGCACCAGAGGCTTCAAGAAAATCATCTTTTCTCACAAATTTGAGCACAACATTTTCGTTCACACAGCACGGAAACACTGGTCCTCCAAAACAGGCTCCAACTGTACTTAACTCTGGAGTTTATCCAGATGGTCCACCTGTGCCAGTTCGTGCCGGTAAACTACTTAAATATGTGGAGACAGCTGAGGTTGTGCGAGGCCCACATGATGCTCCTGGCCATTGGTTGGTAACAGCTGCTAAGCTTGTGACTGATGGTGGTAAGATTGGATTACAAGTGAAGTTTGCATTGTTAGATTATTGGTGATTCCAGGTTACTGTTCAGGGTATATTGGTTTGTCATGTGTTGCTTAAAATGGTTTTGAAACCATAGATCACTTGTATATATTCTTTCTACAGGCTGTGTACAGTACAGTACAGTATACAAAATGAGTGGCTGTTGACATCGGGCAATAGAAAATTAAAATTTGACTATTCTGTTAATTCTGGATGCATTTAAATGTTGAGTATTTAAATCATCATCGTGAACAAGTTATGGGGAAAATGGGAAAAAC

Coding sequences of Glyma05g28180

Limit To All Plant Sequences

>Glyma05g28180.1   sequence type=CDS   gene model=Glyma05g28180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGGAAAAGGTTGTTGAGATGGTGGCATTGGAGTCTTTGGGAAAAGGGTTCGATTTGGCCAGCGATTTTCGGTTGCGGTTCGCAAAGGGAATTCATGGAGAGAGGTTGGTGGTGCTTGATGAACAGAACAAGAGGGATATTTTGATTCCTGGAACTGGAGGAGTTACCATTAAAGGGGTTTCTGAGGATATTCGTTGTGATAAAGGGGATAGAATACGCTTCAAGTCTGATGTACTTGAATTCAACCAGATGTCTGAGTTGCTTAATCAGAAATCAGCAGTGCAAGGGAAAGTTCCTTCTGGCTATTTTAATGCGCTCTTTGATTTGAGTGGGGATTGGTTTCGTGATGCTGCTGACACCAAGTACCTTGCTTTTGATGGGTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCTCCACTCATACTGCAAGAGGAGGTTAAGAAGTCTGTTCCGGCTCAGTGGGATCCGGCTTCGTTGTCTAGGTTCATCCAGACATATGGTACACACATAATAGTAGGTATGGCTGTAGGAGGTCAAGATGTAATATGTGTCAAACAAAAACATTCTTCAAAGATTCCTCCTGGTGATCTCAGAAGACATTTAGAGGATCTTGGAGATTTTTTATTCTCAGATGTCAGAAGCCCTTCTTTACTACAGAGGAAGATAGCAGATGGAAAACAGAAGATCCCCGAGGTCTTTAACCGTGTGATGCAATCAAACACAATGCAGTTCACTAGTATTTCAGAAACATCAAGCAAGGATGGCCTCACTATTATTTGCTCAAAAAGAGGAGGAGATATGTTCAAGCACAGTCACTCAATTTGGCTTCAGACAGTGCCGTCTAACCCTGAAGCAATCCTCTTCAAGTTTGTTCCAATTTCCTCTCTTCTGACAGGAATTCCTGGAAGTGGATATCTTAGTCATGCAATCAATCTGTATCTACGCTATAAGCCTTCTCCTGGAGATTTACAGTACTTTCTGGAGTTTCAAATTCCAAGGCAATGGGCACCCATGTTTTGCGAGCTGCCTCTCAGGCATCAGAATAGAAAGACTGCTTCTCCTTCCCTGCAATTTAGTTTCATGGGTCCAAAGCTTCATATAATCTCTACACAGGTGGTAAGTGAACAAAAACCTGTGGTTGGCATGCGCATGTACTTGGAGGGCAGGAAATGTGACAGACTTGCTTTACATATAAATCATCTTTCAAGCCTCCCAAATAAAATGATCCTCTCTTCAGGAACCTCAACCTTGAGTACACCATCGATGTGGCGAGGATCTGATGATAATGAATCCAGTGATCAATTTCTGGAACGAATCAGATGGAAGAGATTCTCAAATGTGTGCACAGCAGTGGTTAAGCATGATCCTAACTGGTTGAATAATTCTGGAGGTGTTTATATTGTAACAGGTGCACAACTCCTTAGCAAAGGGAGCTGGCCAAGGAATGTGCTTCATCTGCGGCTTCTCTTTGCTCATACACCTAATTGCAGTATCCGGAAGTCAGAGTGGACTGCTGCACCAGAGGCTTCAAGAAAATCATCTTTTCTCACAAATTTGAGCACAACATTTTCGTTCACACAGCACGGAAACACTGGTCCTCCAAAACAGGCTCCAACTGTACTTAACTCTGGAGTTTATCCAGATGGTCCACCTGTGCCAGTTCGTGCCGGTAAACTACTTAAATATGTGGAGACAGCTGAGGTTGTGCGAGGCCCACATGATGCTCCTGGCCATTGGTTGGTAACAGCTGCTAAGCTTGTGACTGATGGTGGTAAGATTGGATTACAAGTGAAGTTTGCATTGTTAGATTATTGGTGA

>Glyma05g28180.2   sequence type=CDS   gene model=Glyma05g28180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCTGACACCAAGTACCTTGCTTTTGATGGGTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCTCCACTCATACTGCAAGAGGAGGTTAAGAAGTCTGTTCCGGCTCAGTGGGATCCGGCTTCGTTGTCTAGGCAGGTTCATCCAGACATATGGTACACACATAATAGTAGGTATGGCTGTAGGAGGTCAAGATGTAATATGTGTCAAACAAAAACATTCTTCAAAGATTCCTCCTGGTGATCTCAGAAGACATTTAGAGGATCTTGGAGATTTTTTATTCTCAGATGTCAGAAGCCCTTCTTTACTACAGAGGAAGATAGCAGATGGAAAACAGAAGATCCCCGAGGTCTTTAACCGTGTGATGCAATCAAACACAATGCAGTTCACTAGTATTTCAGAAACATCAAGCAAGGATGGCCTCACTATTATTTGCTCAAAAAGAGGAGGAGATATGTTCAAGCACAGTCACTCAATTTGGCTTCAGACAGTGCCGTCTAACCCTGAAGCAATCCTCTTCAAGTTTGTTCCAATTTCCTCTCTTCTGACAGGAATTCCTGGAAGTGGATATCTTAGTCATGCAATCAATCTGTATCTACGCTATAAGCCTTCTCCTGGAGATTTACAGTACTTTCTGGAGTTTCAAATTCCAAGGCAATGGGCACCCATGTTTTGCGAGCTGCCTCTCAGGCATCAGAATAGAAAGACTGCTTCTCCTTCCCTGCAATTTAGTTTCATGGGTCCAAAGCTTCATATAATCTCTACACAGGTGGTAAGTGAACAAAAACCTGTGGTTGGCATGCGCATGTACTTGGAGGGCAGGAAATGTGACAGACTTGCTTTACATATAAATCATCTTTCAAGCCTCCCAAATAAAATGATCCTCTCTTCAGGAACCTCAACCTTGAGTACACCATCGATGTGGCGAGGATCTGATGATAATGAATCCAGTGATCAATTTCTGGAACGAATCAGATGGAAGAGATTCTCAAATGTGTGCACAGCAGTGGTTAAGCATGATCCTAACTGGTTGAATAATTCTGGAGGTGTTTATATTGTAACAGGTGCACAACTCCTTAGCAAAGGGAGCTGGCCAAGGAATGTGCTTCATCTGCGGCTTCTCTTTGCTCATACACCTAATTGCAGTATCCGGAAGTCAGAGTGGACTGCTGCACCAGAGGCTTCAAGAAAATCATCTTTTCTCACAAATTTGAGCACAACATTTTCGTTCACACAGCACGGAAACACTGGTCCTCCAAAACAGGCTCCAACTGTACTTAACTCTGGAGTTTATCCAGATGGTCCACCTGTGCCAGTTCGTGCCGGTAAACTACTTAAATATGTGGAGACAGCTGAGGTTGTGCGAGGCCCACATGATGCTCCTGGCCATTGGTTGGTAACAGCTGCTAAGCTTGTGACTGATGGTGGTAAGATTGGATTACAAGTGAAGTTTGCATTGTTAGATTATTGGTGA

Predicted protein sequences of Glyma05g28180

Limit To All Plant Sequences

>Glyma05g28180.1   sequence type=predicted peptide   gene model=Glyma05g28180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEKVVEMVALESLGKGFDLASDFRLRFAKGIHGERLVVLDEQNKRDILIPGTGGVTIKGVSEDIRCDKGDRIRFKSDVLEFNQMSELLNQKSAVQGKVPSGYFNALFDLSGDWFRDAADTKYLAFDGYFISLYYLHLTASPLILQEEVKKSVPAQWDPASLSRFIQTYGTHIIVGMAVGGQDVICVKQKHSSKIPPGDLRRHLEDLGDFLFSDVRSPSLLQRKIADGKQKIPEVFNRVMQSNTMQFTSISETSSKDGLTIICSKRGGDMFKHSHSIWLQTVPSNPEAILFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSPGDLQYFLEFQIPRQWAPMFCELPLRHQNRKTASPSLQFSFMGPKLHIISTQVVSEQKPVVGMRMYLEGRKCDRLALHINHLSSLPNKMILSSGTSTLSTPSMWRGSDDNESSDQFLERIRWKRFSNVCTAVVKHDPNWLNNSGGVYIVTGAQLLSKGSWPRNVLHLRLLFAHTPNCSIRKSEWTAAPEASRKSSFLTNLSTTFSFTQHGNTGPPKQAPTVLNSGVYPDGPPVPVRAGKLLKYVETAEVVRGPHDAPGHWLVTAAKLVTDGGKIGLQVKFALLDYW*

>Glyma05g28180.2   sequence type=predicted peptide   gene model=Glyma05g28180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLTPSTLLLMGISFHSTICTSLLLHSYCKRRLRSLFRLSGIRLRCLGRFIQTYGTHIIVGMAVGGQDVICVKQKHSSKIPPGDLRRHLEDLGDFLFSDVRSPSLLQRKIADGKQKIPEVFNRVMQSNTMQFTSISETSSKDGLTIICSKRGGDMFKHSHSIWLQTVPSNPEAILFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSPGDLQYFLEFQIPRQWAPMFCELPLRHQNRKTASPSLQFSFMGPKLHIISTQVVSEQKPVVGMRMYLEGRKCDRLALHINHLSSLPNKMILSSGTSTLSTPSMWRGSDDNESSDQFLERIRWKRFSNVCTAVVKHDPNWLNNSGGVYIVTGAQLLSKGSWPRNVLHLRLLFAHTPNCSIRKSEWTAAPEASRKSSFLTNLSTTFSFTQHGNTGPPKQAPTVLNSGVYPDGPPVPVRAGKLLKYVETAEVVRGPHDAPGHWLVTAAKLVTDGGKIGLQVKFALLDYW*

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