Glyma05g28170 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g28170

Feature Type:	gene_model
Chromosome:	Gm05
Start:	34069403
stop:	34071595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g28170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07880	AT	Annotation by Michelle Graham. TAIR10: Immunoglobulin E-set superfamily protein \| chr3:2514175-2515544 FORWARD LENGTH=240	SoyBase	E_val: 2.00E-86	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010053	GO-bp	Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Rho GDP-dissociation inhibitor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3205	KOG	Rho GDP-dissociation inhibitor	JGI		ISS
PTHR10980	Panther	RHO GDP-DISSOCIATION INHIBITOR-RELATED	JGI		ISS
PTHR10980:SF2	Panther	RHO GUANINE DISSOCIATION INHIBITOR-RELATED	JGI		ISS
PF02115	PFAM	RHO protein GDP dissociation inhibitor	JGI		ISS
UniRef100_G7LHB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rho GDP-dissociation inhibitor n=1 Tax=Medicago truncatula RepID=G7LHB3_MEDTR	SoyBase	E_val: 1.00E-122	ISS
UniRef100_I1K3P3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3P3_SOYBN	SoyBase	E_val: 1.00E-172	ISS

Expression Patterns of Glyma05g28170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g28170

Paralog	Evidence	Comments
Glyma08g11140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g28170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g149100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g28170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g28170

Limit To All Plant Sequences

>Glyma05g28170.1   sequence type=CDS   gene model=Glyma05g28170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCTGCTGTGTCTGCAACCAAGGATGTTCCCTTCAATGCTCATCTGGAGGAAGATATCAAAAACAAAGGAAGCAACAAGGTTGTTGGGGAAGCAGACCGGCTTCCTTACAATGATGATGCCGAAGGAACTGATTCAGAGACAGAGGAAGACCCCAAGTTGGAATTGGATCTTGGTCCTCAGTTTTCCCTCAGGGAACAGCTTGAGAAAGATAAAGATGATGAGAGTTTGAGAAAATGGAAGGAGCAACTTCTGGGAGGTATTGATGTGTCTGCTGTTGGAGAAAACAAAGAGCCAGAAGTGAAGATAGTGAGCCTCACCATAATATGTCCAGGGAGGCCTGACCTCATTCTGCCAATTCCATTTACTTCTGAATCTAAGAATAGTATCTTCACCCTTAAGGAAGGAAGTCAATATCGCTTGAAATTCTCCTTCACTGTCTCCAACAACATTGTTTCTGGCCTCAAATACACCAATGTTGTTTGGAAAACTGGGCTTAGAGTGGACAACACAAAAAAGATGTTGGGAACTTATAGCCCAAGCCAGGAACCATATACATATGAATTGGAAGAAGAAACTACCCCTTCGGGGTTGTTTGCTAGGGGAACCTATTCAGCAAGAACCAAGTTTGTAGATGATGATCACAAATGCTACTTGGATACTAGTTACCACTTTGAAATTCAGAAGAATTGGTCTACACCCATCTAA

Predicted protein sequences of Glyma05g28170

Limit To All Plant Sequences

>Glyma05g28170.1   sequence type=predicted peptide   gene model=Glyma05g28170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAVSATKDVPFNAHLEEDIKNKGSNKVVGEADRLPYNDDAEGTDSETEEDPKLELDLGPQFSLREQLEKDKDDESLRKWKEQLLGGIDVSAVGENKEPEVKIVSLTIICPGRPDLILPIPFTSESKNSIFTLKEGSQYRLKFSFTVSNNIVSGLKYTNVVWKTGLRVDNTKKMLGTYSPSQEPYTYELEEETTPSGLFARGTYSARTKFVDDDHKCYLDTSYHFEIQKNWSTPI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain