SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67490 | AT | Annotation by Michelle Graham. TAIR10: glucosidase 1 | chr1:25280633-25286581 REVERSE LENGTH=852 | SoyBase | E_val: 0 | ISS |
| GO:0009311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligosaccharide metabolic process | SoyBase | N/A | ISS |
| GO:0009913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation | SoyBase | N/A | ISS |
| GO:0010053 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004558 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-glucosidase activity | SoyBase | N/A | ISS |
| GO:0004573 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannosyl-oligosaccharide glucosidase activity | SoyBase | N/A | ISS |
| KOG2161 | KOG | Glucosidase I | JGI | ISS | |
| PTHR10412 | Panther | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE | JGI | ISS | |
| PTHR10412:SF1 | Panther | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE-RELATED | JGI | ISS | |
| PF03200 | PFAM | Mannosyl oligosaccharide glucosidase | JGI | ISS | |
| UniRef100_B9RMG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mannosyl-oligosaccharide glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RMG4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K3K7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3K7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g27890 not represented in the dataset |
Glyma05g27890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g146400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g27890.1 sequence type=CDS gene model=Glyma05g27890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGGAAATGGAAGAAGAACCACTCGCAGCGGAGAGAGATTGTCTTCCGAAAGGTTGAATCGTCACAGAGAAAGAAGCAAATACGGAAGCTTCATTCCGATGTTCAACAATGGCAATTTCAAAGTTGGGTTCGGTATCGTCTTGTTTTTGAGCCATTATTACCTCGCCAATTCAGCTGCAGAAGATCGTATTCCTCGCGTTGTGACGCCGTTTCCCGCGCCAAAGATAACGGACCTTCCTCAGTTTGAAGGTGAGCACAAAGAGAGTTTGTATTGGGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAGGACTCCAAAATCTTTGATAGCTGGATTAATGTGGATTGTTGTGAAGGACGGCAGATATCACTTGCGGCATGTTTGCAAACATGAGGATAACCTTAGTACTTATGGTTGGACTAAGCACAATGGACGAGATTTTGGACATCAAGTGCTGGTTGACCATGGCATGGCCATCACCACTGGGTTCTTAAAATCAAAAGTGGAAGGCAGTGGCTATGGAGGGGATTGGGCAGTTCGAATTAATGTGCAAATTGATAAGTCCAAGTGGAATGTGGAATTTGGGAGAGGTGCCCAGCTCTTTTTCTATTTGGCTGATGAAGCTGGTAATGCTCTAAACTTAAGTAGAAAAAACTTGAACGTTCATACGGATTCTTTGGTGGCATCTGGCTCTCGAGAAGACATTGGAGATTGGCAGCTACATTTAAAATCAATGGATGATTTGGAGCTGCATTATTCTGGATTTCACACTCCTCACTTTCACAATTTGTCCAATCTTGTTGAGGAAAATCTTGCATCACAAATAAGGAAGCATGCTCGATTGCTGCTATCTGACTCATCAGATGATTCTCCAAATGTATTAGTTTTTCAGATTATTGGTGGATTTTCTTTCACAACAGATGTTATATTTATCTCTGGAACTGATTCAGAAAGTTCAATAGTGGAAAAGCGTGCCAGCAGTCTTACAGGAACCTCACTGTCCAATCAGCTGAAATACAAAGAACAAGCATTTGATGAAAAGTTTGAGAAAATTTTCAATTTAGCTGAGAAGGTGGATTCAGAATCCATATCTGTTGGTAAGGCAGCTGTTGGAAACTTGTTAGGTGGCATTGGCTACTTCTATGGTCAGTCAAAGATTGCTGTTTCAAGAATCTATAATCTTAGTGAGCATGTTGATTATATATCATATTGGCCTGCTGAGCTTTACACAGCTGTACCATGTCGACCTTCCTTTCCAAGAGGATTTTTATGGGATGAAGGTTTTCATCAACTAATAATCTGGCGTTGGGATATCCATATTTCATTGGATATCATTGGACACTGGTTAGATTTGATGAATGCTGATGGATGGATACCACGTGAACAAATTCTCGGGGCTGAAGCACTCAGTCGGGTTCCAGAGGAATATGTTCCTCAGCATCCAACAAATGGAAATCCTCCGACTCTGTTTTTAGCATTAAATGGTATAATTAATGGATTGAAGAATAATGAGTTTACTGCAACGGATAAAACTGAGATCTCTCTGTTCCTGGAGCGTGCCTTTGTTCGATTAGAAGCATGGTTCCAATGGTTCAATACAACTCAGTCAGGGAAACAGATGAGCAGCTACTATTGGCATGGACGAAACAATAGAACTATATATGAATTAAGTCCCAAGACACTGTCATCTGGATTTGATGATTATCCACGTGCTTCACACCCAAGTGCAGATGAGCGCCACGTGGATCTTAGATGTTGGATGTTACTTGCAACCGATTGTCTGCAATACATTGAAGAGTTGTTGGATAAGGAAACTAAACCTGGCAAAAATTATGGTTCTACTGCTAAATTGCTATCAGATGTCGAGTTACTGAACCAGATGCATTTTGATGATGCACATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAGATTCAACTTAAATGGAAAGAAGTGGAGATAGGACACAATCATACTGCTCGCCAACTTGTCAGGGTTGTTTTAGAGAAGCCCGTATTGAGATTGGTTCCTCACATTGGTTATGTTAGTCTATTCCCATTCATGGGGAAGATCATTCCATCTGGATCATGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCACAGTCTCTTTTGGACTGGCTATGGACTGCGATCGCTTGCCACGACAAGTTCCTTGTACATGAAATTCAACTCTGAGCTTGAGGGTCCATATTGGAGAGGTCAAATTTGGATAAACATGAATTACAGAATTCTTTCAGCGCTCCACCATTACTCCAAAGAGAATGGACCATATCAGGACAGAGCTAAAGCTATCTACAAAGAACTGAGAAGCAATTTAATTAGAAATATAGTACGCAATTATCAACAAACTGGATTTTTGTGGGAACAGTACGATCAGAATAACGGTAAGGGAAAAGGGTCACATCCATTTACCGGCTGGACATCACTTGTAGTATTAATCATGGGGGAAGAATATGACATAATTTAG
>Glyma05g27890.1 sequence type=predicted peptide gene model=Glyma05g27890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGNGRRTTRSGERLSSERLNRHRERSKYGSFIPMFNNGNFKVGFGIVLFLSHYYLANSAAEDRIPRVVTPFPAPKITDLPQFEGEHKESLYWGTYRPQVYLGIRARTPKSLIAGLMWIVVKDGRYHLRHVCKHEDNLSTYGWTKHNGRDFGHQVLVDHGMAITTGFLKSKVEGSGYGGDWAVRINVQIDKSKWNVEFGRGAQLFFYLADEAGNALNLSRKNLNVHTDSLVASGSREDIGDWQLHLKSMDDLELHYSGFHTPHFHNLSNLVEENLASQIRKHARLLLSDSSDDSPNVLVFQIIGGFSFTTDVIFISGTDSESSIVEKRASSLTGTSLSNQLKYKEQAFDEKFEKIFNLAEKVDSESISVGKAAVGNLLGGIGYFYGQSKIAVSRIYNLSEHVDYISYWPAELYTAVPCRPSFPRGFLWDEGFHQLIIWRWDIHISLDIIGHWLDLMNADGWIPREQILGAEALSRVPEEYVPQHPTNGNPPTLFLALNGIINGLKNNEFTATDKTEISLFLERAFVRLEAWFQWFNTTQSGKQMSSYYWHGRNNRTIYELSPKTLSSGFDDYPRASHPSADERHVDLRCWMLLATDCLQYIEELLDKETKPGKNYGSTAKLLSDVELLNQMHFDDAHGAYFDFGNHTEKIQLKWKEVEIGHNHTARQLVRVVLEKPVLRLVPHIGYVSLFPFMGKIIPSGSWILEKQLELISNHSLFWTGYGLRSLATTSSLYMKFNSELEGPYWRGQIWINMNYRILSALHHYSKENGPYQDRAKAIYKELRSNLIRNIVRNYQQTGFLWEQYDQNNGKGKGSHPFTGWTSLVVLIMGEEYDII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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