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Report for Sequence Feature Glyma05g27850

Feature Type:gene_model
Chromosome:Gm05
Start:33708696
stop:33715812
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g27850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27900AT Annotation by Michelle Graham. TAIR10: RNA helicase family protein | chr1:9715615-9720346 REVERSE LENGTH=700 SoyBaseE_val: 0ISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004004GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent RNA helicase activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0922 KOG DEAH-box RNA helicase JGI ISS
PTHR18934Panther ATP-DEPENDENT RNA HELICASE JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
PF04408PFAM Helicase associated domain (HA2) JGI ISS
PF07717PFAM Domain of unknown function (DUF1605) JGI ISS
UniRef100_B9RMI9UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RMI9_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339560UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339560 related cluster n=1 Tax=unknown RepID=UPI0002339560 SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g27850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g27850 not represented in the dataset
Glyma05g27850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g27850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g146100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g27850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g27850
>Glyma05g27850.2   sequence type=transcript   gene model=Glyma05g27850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATTGAGGAACAACACGCTGAGTCACTTGCATTACATCTTTTTGCTTTCTCACTAGGAACACGATGGTTTCTCTTCCCATAGTTCAATATGAAGAGAAAATCATCGAAACCGTTGAGCGCAACCCTGTCGTCGTCGTCATTGGAGAGACCGGTTCCGGCAAGAGTACTCAACTCTCTCAGATGCTCCACCGCCGCGGCTACGGTAAAATCGCCATCACTCAGCCCCGTCGAGTCGCCGCCGTCTCCGTCGCCAGACGAGTCGCGCACGAGCTCGGCGTTCAGCTCGGGGAGGAAGTAGGGTACGCCATTCGGTTCGAGGATAGGACTTCGCACAGCACGCGCATAAAGTATCTTACTGATGGTGTCCTTCTCCGAGAAAGTTTAGCTAATCCTGAATTGAATGAGTATTCTGTGATCATATTGGACGAGGCTCATGAACGGAGTTTAAACACGGATATATTGATGGGGCTAATGAGACGCTTGGTAAATATCCGTTCCTCCGATCTCAAGGTTTTGATCACGTCTGCTACTCTTGATGGGGAAAAAGTATCTAAGTTCTTTGCCGATTGTCCTGTATTGAACGTCCCGGGAAAGTTGTATCCGGTTGAGGTTCTTTATAGCCGTGAGCGTCCCTCAAGCTACCTTGAGTCTTCGCTGAAAACAGCTCTTGATATACATATTCGTGAACCGGAAGGGGATATTTTAATATTCATGACTGGACAGGATGACATAGAGAAGTTGGTATCTAAGTTAGAAGATAAGGTTCGTGCTCTCGAGGAAGGTTCCTGCATGGATGCTATAATCCTCCCCCTACATGGTTCTTTGCCCCCTGAATTGCAGGTGCGCGTATTTAGTCCTCCACCTCCAAATTGTAGACGAATCATTGTTGCAACAAATATTGCTGAAACTTCCTTGACTGTTGATGGTGTAGTGTATGTTATTGACTCTGGGTATGTGAAGCAAAGGCAGTATAATCCATCTAGTGGCATGTATTCTCTTGATGTTGTTCAAATTAGCAAAGTGCAAGCTAACCAGCGAGCAGGCCGAGCTGGACGGACACGTCCTGGGAAATGCTACCGTCTATATCCTTCCCGTATTTACAATGATGAGTTTTTGGACGTTACAGTTCCTGAAATTCAGAGATCTTCCCTTGCTGGCAGTGTTCTTTACTTAAAGTCATTGGACCTCCCAGATATTGACATTCTAAAATTTGACTTTCTGGATCCTCCATCATCTGAGTCCTTACAAGATGCCTTGAAGCAGTTATTTCTGATTGATGCTATTGATGAAAATGGTGCAATTACAAGTATTGGACAGAAAATGGCTGAGCTTCCCTTAGAACCATCATTGGCAAAAACTTTAATGGAGGCAAACAATTATGGTTGCTTATATGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTACATTGCTACCAGGGCAGAGGAAGACTGAGAAGAAGAGGAAACATACTATATCTAACCTTCCTGATGGTTCTGGATTGGGTGATCACATTCAATTGCTGCAGATATACGAGTGCTGGGATCAAACTGATTTTGACATTGGCTGGTGCAAAGATAATGGCTTGCAGGTGCGAGGGATGTTGTTTGTCAGAGACGTCCGTAAGCAGTTATCCCAGATAATGCAGAAAATATCAAAGGGACCACTGGATGTAAGGGCAAATGGGAAAAGAGAAGAGTTCAGGCAGGATTATCGAAATTTGAGGAAGGCTTTATGTATGGGCTATGCGAATCAGCTGGCTGAAAGAAAGATGCATCACAATGGTTATCGAACTTTGGGTTTCCAAGCTCAAGTAGTCCAGGTGCATCCGTCATCTGTGTTGAGTCTTGATGACCTGGGGAAGTTCCCAGACTATGTTGTGTACCATGAACTAATTGCTACGCCACGGCCGTACATGAGAAATGTATGTGCTGTTGAGATGAGATGGGTTATACCTATTATTAACAAGCTCAAGAGCCTGGATGTGTACAAATTAAGTGGTGGTGTTCATCATGTTGAGGAGGAACCTGAGAAAAAGCTTCCAGATTTTCCCAAGAAGGATGTTGAGGTGGCTAGTACTGCTGATGACCGTGAAAGTAGAATCCAAGCTGCTAGAGAACGATTTCTTGCTCGTAAAGGCAAAAAATGAGCCTGAAAGGATGGAGAGGTTAAATACACTAGAGATGATCTTGGCCTGTCAGGCATTTTATTAGCTGGTATAGTTACCTGAAAGGATGGAAGAGTCTGGATGAGCTGATGCTTGAGTTTTCCACGTTGTCACAACACCAATTTCGTGCTATGATGTTATCTCAGCTTGATCCTCATCAGTTGTCTCTCCCAAACATTACAAGATTTAGCACAAAAACCTAAGATTTGGTCTCATACTGTTCTGATAAGTTGGTTGATGAGTGGCTGAATGCATATATACTTTGTGCTCATGCTTTTGGTTTGAAATATACCCAGAAAGAAGAAAGAAAAAGGAAGAGGAGACAGAAAGTAGCAAGTCCCCTTCACAAGTAAATGTTAATTAAACAGTTTAGGGGTTTTGAAATGCAATCGTGGTTACTGTCATCTGATTGTGATAATTACCTTTGAGTGGCACACTTTGCCTGATAGTTAAATTACATTTTTGTTTATATTGAGCCCGTTTAGATGGAGATAATGCCTAGCTGAGATTGCATTGGAAGTTAAACTTAAAACATTATGTAGTTATGTATATGAAACAAGATCAATCTTTCTCTAATAGGGTGTTGATTCTCAACCTGATGATCACTAATTCAAGGTGTTGGGACATCACCTATAATCAATGATTGAAA
Coding sequences of Glyma05g27850
>Glyma05g27850.1   sequence type=CDS   gene model=Glyma05g27850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCTAATGAGACGCTTGGTAAATATCCGTTCCTCCGATCTCAAGGTTTTGATCACGTCTGCTACTCTTGATGGGGAAAAAGTATCTAAGTTCTTTGCCGATTGTCCTGTATTGAACGTCCCGGGAAAGTTGTATCCGGTTGAGGTTCTTTATAGCCGTGAGCGTCCCTCAAGCTACCTTGAGTCTTCGCTGAAAACAGCTCTTGATATACATATTCGTGAACCGGAAGGGGATATTTTAATATTCATGACTGGACAGGATGACATAGAGAAGTTGGTATCTAAGTTAGAAGATAAGGTTCGTGCTCTCGAGGAAGGTTCCTGCATGGATGCTATAATCCTCCCCCTACATGGTTCTTTGCCCCCTGAATTGCAGGTGCGCGTATTTAGTCCTCCACCTCCAAATTGTAGACGAATCATTGTTGCAACAAATATTGCTGAAACTTCCTTGACTGTTGATGGTGTAGTGTATGTTATTGACTCTGGGTATGTGAAGCAAAGGCAGTATAATCCATCTAGTGGCATGTATTCTCTTGATGTTGTTCAAATTAGCAAAGTGCAAGCTAACCAGCGAGCAGGCCGAGCTGGACGGACACGTCCTGGGAAATGCTACCGTCTATATCCTTCCCGTATTTACAATGATGAGTTTTTGGACGTTACAGTTCCTGAAATTCAGAGATCTTCCCTTGCTGGCAGTGTTCTTTACTTAAAGTCATTGGACCTCCCAGATATTGACATTCTAAAATTTGACTTTCTGGATCCTCCATCATCTGAGTCCTTACAAGATGCCTTGAAGCAGTTATTTCTGATTGATGCTATTGATGAAAATGGTGCAATTACAAGTATTGGACAGAAAATGGCTGAGCTTCCCTTAGAACCATCATTGGCAAAAACTTTAATGGAGGCAAACAATTATGGTTGCTTATATGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTACATTGCTACCAGGGCAGAGGAAGACTGAGAAGAAGAGGAAACATACTATATCTAACCTTCCTGATGGTTCTGGATTGGGTGATCACATTCAATTGCTGCAGATATACGAGTGCTGGGATCAAACTGATTTTGACATTGGCTGGTGCAAAGATAATGGCTTGCAGGTGCGAGGGATGTTGTTTGTCAGAGACGTCCGTAAGCAGTTATCCCAGATAATGCAGAAAATATCAAAGGGACCACTGGATGTAAGGGCAAATGGGAAAAGAGAAGAGTTCAGGCAGGATTATCGAAATTTGAGGAAGGCTTTATGTATGGGCTATGCGAATCAGCTGGCTGAAAGAAAGATGCATCACAATGGTTATCGAACTTTGGGTTTCCAAGCTCAAGTAGTCCAGGTGCATCCGTCATCTGTGTTGAGTCTTGATGACCTGGGGAAGTTCCCAGACTATGTTGTGTACCATGAACTAATTGCTACGCCACGGCCGTACATGAGAAATGTATGTGCTGTTGAGATGAGATGGGTTATACCTATTATTAACAAGCTCAAGAGCCTGGATGTGTACAAATTAAGTGGTGGTGTTCATCATGTTGAGGAGGAACCTGAGAAAAAGCTTCCAGATTTTCCCAAGAAGGATGTTGAGGTGGCTAGTACTGCTGATGACCGTGAAAGTAGAATCCAAGCTGCTAGAGAACGATTTCTTGCTCGTAAAGGCAAAAAATGA

>Glyma05g27850.2   sequence type=CDS   gene model=Glyma05g27850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCTCTTCCCATAGTTCAATATGAAGAGAAAATCATCGAAACCGTTGAGCGCAACCCTGTCGTCGTCGTCATTGGAGAGACCGGTTCCGGCAAGAGTACTCAACTCTCTCAGATGCTCCACCGCCGCGGCTACGGTAAAATCGCCATCACTCAGCCCCGTCGAGTCGCCGCCGTCTCCGTCGCCAGACGAGTCGCGCACGAGCTCGGCGTTCAGCTCGGGGAGGAAGTAGGGTACGCCATTCGGTTCGAGGATAGGACTTCGCACAGCACGCGCATAAAGTATCTTACTGATGGTGTCCTTCTCCGAGAAAGTTTAGCTAATCCTGAATTGAATGAGTATTCTGTGATCATATTGGACGAGGCTCATGAACGGAGTTTAAACACGGATATATTGATGGGGCTAATGAGACGCTTGGTAAATATCCGTTCCTCCGATCTCAAGGTTTTGATCACGTCTGCTACTCTTGATGGGGAAAAAGTATCTAAGTTCTTTGCCGATTGTCCTGTATTGAACGTCCCGGGAAAGTTGTATCCGGTTGAGGTTCTTTATAGCCGTGAGCGTCCCTCAAGCTACCTTGAGTCTTCGCTGAAAACAGCTCTTGATATACATATTCGTGAACCGGAAGGGGATATTTTAATATTCATGACTGGACAGGATGACATAGAGAAGTTGGTATCTAAGTTAGAAGATAAGGTTCGTGCTCTCGAGGAAGGTTCCTGCATGGATGCTATAATCCTCCCCCTACATGGTTCTTTGCCCCCTGAATTGCAGGTGCGCGTATTTAGTCCTCCACCTCCAAATTGTAGACGAATCATTGTTGCAACAAATATTGCTGAAACTTCCTTGACTGTTGATGGTGTAGTGTATGTTATTGACTCTGGGTATGTGAAGCAAAGGCAGTATAATCCATCTAGTGGCATGTATTCTCTTGATGTTGTTCAAATTAGCAAAGTGCAAGCTAACCAGCGAGCAGGCCGAGCTGGACGGACACGTCCTGGGAAATGCTACCGTCTATATCCTTCCCGTATTTACAATGATGAGTTTTTGGACGTTACAGTTCCTGAAATTCAGAGATCTTCCCTTGCTGGCAGTGTTCTTTACTTAAAGTCATTGGACCTCCCAGATATTGACATTCTAAAATTTGACTTTCTGGATCCTCCATCATCTGAGTCCTTACAAGATGCCTTGAAGCAGTTATTTCTGATTGATGCTATTGATGAAAATGGTGCAATTACAAGTATTGGACAGAAAATGGCTGAGCTTCCCTTAGAACCATCATTGGCAAAAACTTTAATGGAGGCAAACAATTATGGTTGCTTATATGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTACATTGCTACCAGGGCAGAGGAAGACTGAGAAGAAGAGGAAACATACTATATCTAACCTTCCTGATGGTTCTGGATTGGGTGATCACATTCAATTGCTGCAGATATACGAGTGCTGGGATCAAACTGATTTTGACATTGGCTGGTGCAAAGATAATGGCTTGCAGGTGCGAGGGATGTTGTTTGTCAGAGACGTCCGTAAGCAGTTATCCCAGATAATGCAGAAAATATCAAAGGGACCACTGGATGTAAGGGCAAATGGGAAAAGAGAAGAGTTCAGGCAGGATTATCGAAATTTGAGGAAGGCTTTATGTATGGGCTATGCGAATCAGCTGGCTGAAAGAAAGATGCATCACAATGGTTATCGAACTTTGGGTTTCCAAGCTCAAGTAGTCCAGGTGCATCCGTCATCTGTGTTGAGTCTTGATGACCTGGGGAAGTTCCCAGACTATGTTGTGTACCATGAACTAATTGCTACGCCACGGCCGTACATGAGAAATGTATGTGCTGTTGAGATGAGATGGGTTATACCTATTATTAACAAGCTCAAGAGCCTGGATGTGTACAAATTAAGTGGTGGTGTTCATCATGTTGAGGAGGAACCTGAGAAAAAGCTTCCAGATTTTCCCAAGAAGGATGTTGAGGTGGCTAGTACTGCTGATGACCGTGAAAGTAGAATCCAAGCTGCTAGAGAACGATTTCTTGCTCGTAAAGGCAAAAAATGA
Predicted protein sequences of Glyma05g27850
>Glyma05g27850.1   sequence type=predicted peptide   gene model=Glyma05g27850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLMRRLVNIRSSDLKVLITSATLDGEKVSKFFADCPVLNVPGKLYPVEVLYSRERPSSYLESSLKTALDIHIREPEGDILIFMTGQDDIEKLVSKLEDKVRALEEGSCMDAIILPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRIYNDEFLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSSESLQDALKQLFLIDAIDENGAITSIGQKMAELPLEPSLAKTLMEANNYGCLYEALTVAAMLSAETTLLPGQRKTEKKRKHTISNLPDGSGLGDHIQLLQIYECWDQTDFDIGWCKDNGLQVRGMLFVRDVRKQLSQIMQKISKGPLDVRANGKREEFRQDYRNLRKALCMGYANQLAERKMHHNGYRTLGFQAQVVQVHPSSVLSLDDLGKFPDYVVYHELIATPRPYMRNVCAVEMRWVIPIINKLKSLDVYKLSGGVHHVEEEPEKKLPDFPKKDVEVASTADDRESRIQAARERFLARKGKK*

>Glyma05g27850.2   sequence type=predicted peptide   gene model=Glyma05g27850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLPIVQYEEKIIETVERNPVVVVIGETGSGKSTQLSQMLHRRGYGKIAITQPRRVAAVSVARRVAHELGVQLGEEVGYAIRFEDRTSHSTRIKYLTDGVLLRESLANPELNEYSVIILDEAHERSLNTDILMGLMRRLVNIRSSDLKVLITSATLDGEKVSKFFADCPVLNVPGKLYPVEVLYSRERPSSYLESSLKTALDIHIREPEGDILIFMTGQDDIEKLVSKLEDKVRALEEGSCMDAIILPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRIYNDEFLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSSESLQDALKQLFLIDAIDENGAITSIGQKMAELPLEPSLAKTLMEANNYGCLYEALTVAAMLSAETTLLPGQRKTEKKRKHTISNLPDGSGLGDHIQLLQIYECWDQTDFDIGWCKDNGLQVRGMLFVRDVRKQLSQIMQKISKGPLDVRANGKREEFRQDYRNLRKALCMGYANQLAERKMHHNGYRTLGFQAQVVQVHPSSVLSLDDLGKFPDYVVYHELIATPRPYMRNVCAVEMRWVIPIINKLKSLDVYKLSGGVHHVEEEPEKKLPDFPKKDVEVASTADDRESRIQAARERFLARKGKK*






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