Glyma05g27791 - SoyBase

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Report for Sequence Feature Glyma05g27791

Feature Type:	gene_model
Chromosome:	Gm05
Start:	33663781
stop:	33667211
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27791

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27880	AT	Annotation by Michelle Graham. TAIR10: DEAD/DEAH box RNA helicase family protein \| chr1:9708940-9713901 FORWARD LENGTH=911	SoyBase	E_val: 1.00E-93	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006310	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA recombination	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
PTHR13710	Panther	DNA HELICASE RECQ FAMILY MEMBER	JGI		ISS
PTHR13710:SF1	Panther	gb def: dna helicase possibly pseudo [schizosaccharomyces pombe]	JGI		ISS
UniRef100_I1KRZ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRZ4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7FAH0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OJ000223_09.17 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7FAH0_ORYSJ	SoyBase	E_val: 1.00E-97	ISS

Expression Patterns of Glyma05g27791

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g27791 not represented in the dataset	Glyma05g27791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27791

Paralog	Evidence	Comments
Glyma08g10780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27791 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g145500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27791

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g27791

Limit To All Plant Sequences

>Glyma05g27791.2   sequence type=transcript   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGAATTTGCCACGCAAGATAGATAAATTTGAGTGCCATCTCTCTAAATCTAGATATTTAAACTTGAATTTTCAGATAGGACATCTCAATCTTATACTACTATTTGTTAATTTTTAACTGAAATCTAGAAAACTAAATATGGTTTCAGTAATTATTTAGTTGCTTGTATTTTTAACTTTTGGCACTATTGCAGTCTCCTCCGCCATTACTTGCTCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAACAAGCATGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTTACAGCAGTGGAATTAACAAATCAGTTATACGACCTGAAGTTGATGGGAGAAATAACTTACGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACCTGTTATCTCTATCAGCAGATAACACCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATAATATGCAAGGTTGCGGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATCGGTCAAAGCAGTCCTTTCCTGCGGGCAGATCTAAAGGTCTTTCTGCAGAGCAATTCACATGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGTCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTAAGGAGGTGATGGAAGCAGCAAAGGAAGAGCTTAAGAATTTTGTTGGAAAAGATACACTATAGCCGTTTAGAATTGAGTTTACCATCTGACAAATTTGGATCAGGGGTCACCCAATCTTTAACAGAATCCGTCCAAGACCTGCATTGATCCAAGGCCCAGAAAAAAAAAGCTCAATTTTTGTGCCCTATCAAGCGGTTGGACTCCAACTGGGTAGTTCCGTGGCATGTTATTATTGCCGTAAATGTGGCGCCAGCACATGTCTGTCATCACAGATTGAGACAGAAGCGAAAGGAAAATTGAACCTCTGCCTCATTTGTGTCATTGATTTGCATTTTCCAATTGTCCGTCGGCATAGCATGCACCTTTTGGTTGGAGGAATCAAGTATTTACAATCCTTTGCTGTCTGATATTTTGTTGTCACCTTGTCCAAGAGAGCAATCCCTCTGGTCTTATATTTAGTTTTTTTTTTCTTTTCTTTTCCAATAGCACAATACCAACAACGGCTTAAAGTTGTTATTATTTGCTTACACTTAGATATCTACTTTACCAAAAGATGTTGGCATAGAGTCATTTGAGTTCATAAATTAAGGTTGGTTCAATTTTTGACTTGAACATAGAGTCATTAAAGATATTATTTTATTCTAGAATGGATCAGATCTAGTAGAAGGAAATTGAGTGTGAA

>Glyma05g27791.3   sequence type=transcript   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGGGATATATTTCTTTCTTGAGTTCGAATGTGTGCTTAAGAAATATGTTTCAAAAGTGCACAAGTCTTCTTTCTTCTGAGTTTCTACACTTCAAGGGAAGATGTCAGATGCTATGATTGAAGTTGATGGGAGAAATAACTTACGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACCTGTTATCTCTATCAGCAGATAACACCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATAATATGCAAGGTTGCGGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATCGGTCAAAGCAGTCCTTTCCTGCGGGCAGATCTAAAGGTCTTTCTGCAGAGCAATTCACATGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGTCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTAAGGAGGTGATGGAAGCAGCAAAGGAAGAGCTTAAGAATTTTGTTGGAAAAGATACACTATAGCCGTTTAGAATTGAGTTTACCATCTGACAAATTTGGATCAGGGGTCACCCAATCTTTAACAGAATCCGTCCAAGACCTGCATTGATCCAAGGCCCAGAAAAAAAAAGCTCAATTTTTGTGCCCTATCAAGCGGTTGGACTCCAACTGGGTAGTTCCGTGGCATGTTATTATTGCCGTAAATGTGGCGCCAGCACATGTCTGTCATCACAGATTGAGACAGAAGCGAAAGGAAAATTGAACCTCTGCCTCATTTGTGTCATTGATTTGCATTTTCCAATTGTCCGTCGGCATAGCATGCACCTTTTGGTTGGAGGAATCAAGTATTTACAATCCTTTGCTGTCTGATATTTTGTTGTCACCTTGTCCAAGAGAGCAATCCCTCTGGTCTTATATTTAGTTTTTTTTTTCTTTTCTTTTCCAATAGCACAATACCAACAACGGCTTAAAGTTGTTATTATTTGCTTACACTTAGATATCTACTTTACCAAAAGATGTTGGCATAGAGTCATTTGAGTTCATAAATTAAGGTTGGTTCAATTTTTGACTTGAACATAGAGTCATTAAAGATATTATTTTATTCTAGAATGGATCAGATCTAGTAGAAGGAAATTGAGTGTGAA

Coding sequences of Glyma05g27791

Limit To All Plant Sequences

>Glyma05g27791.1   sequence type=CDS   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTACAGTACTTGCAGTTACATCCACAAATAAATATAACTTGCACTTTGAATTTTCACAAGTCTCCTCCGCCATTACTTGCTCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAACAAGCATGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTTACAGCAGTGGAATTAACAAATCAGTTATACGACCTGAAGTTGATGGGAGAAATAACTTACGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACCTGTTATCTCTATCAGCAGATAACACCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATAATATGCAAGGTTGCGGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATCGGTCAAAGCAGTCCTTTCCTGCGGGCAGATCTAAAGGTCTTTCTGCAGAGCAATTCACATGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGTCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTAAGGAGGTGATGGAAGCAGCAAAGGAAGAGCTTAAGAATTTTGTTGGAAAAGATACACTATAG

>Glyma05g27791.2   sequence type=CDS   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGTTACAGCAGTGGAATTAACAAATCAGTTATACGACCTGAAGTTGATGGGAGAAATAACTTACGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACCTGTTATCTCTATCAGCAGATAACACCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATAATATGCAAGGTTGCGGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATCGGTCAAAGCAGTCCTTTCCTGCGGGCAGATCTAAAGGTCTTTCTGCAGAGCAATTCACATGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGTCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTAAGGAGGTGATGGAAGCAGCAAAGGAAGAGCTTAAGAATTTTGTTGGAAAAGATACACTATAG

>Glyma05g27791.3   sequence type=CDS   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAATAACTTACGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACCTGTTATCTCTATCAGCAGATAACACCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATAATATGCAAGGTTGCGGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATCGGTCAAAGCAGTCCTTTCCTGCGGGCAGATCTAAAGGTCTTTCTGCAGAGCAATTCACATGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGTCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTAAGGAGGTGATGGAAGCAGCAAAGGAAGAGCTTAAGAATTTTGTTGGAAAAGATACACTATAG

Predicted protein sequences of Glyma05g27791

Limit To All Plant Sequences

>Glyma05g27791.1   sequence type=predicted peptide   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTLLTRLELGDVQYLQLHPQINITCTLNFHKSPPPLLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADNTRWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKDTL*

>Glyma05g27791.2   sequence type=predicted peptide   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADNTRWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKDTL*

>Glyma05g27791.3   sequence type=predicted peptide   gene model=Glyma05g27791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEITYEMKDLAYCYRIIEVPTDLLSLSADNTRWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKDTL*

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