Glyma05g27410 - SoyBase

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Report for Sequence Feature Glyma05g27410

Feature Type:	gene_model
Chromosome:	Gm05
Start:	33334779
stop:	33341402
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30220	AT	Annotation by Michelle Graham. TAIR10: inositol transporter 2 \| chr1:10632957-10635439 REVERSE LENGTH=580	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0015798	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol transport	SoyBase	N/A	ISS
GO:0023052	GO-bp	Annotation by Michelle Graham. GO Biological Process: signaling	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0005366	GO-mf	Annotation by Michelle Graham. GO Molecular Function: myo-inositol:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0569	KOG	Permease of the major facilitator superfamily	JGI		ISS
PTHR24063	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24063:SF85	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_G7IGM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carbohydrate transporter/sugar porter n=1 Tax=Medicago truncatula RepID=G7IGM5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000189D73C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D73C related cluster n=1 Tax=unknown RepID=UPI000189D73C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27410

Paralog	Evidence	Comments
Glyma08g10410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g142500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g27410

Limit To All Plant Sequences

>Glyma05g27410.1   sequence type=CDS   gene model=Glyma05g27410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGGAGGAGTAGAAGTTGATGCCTCTGCTTTCAGAGAATGCTTGTCTCTGTCATGGAAAAATCCTTACGTTCTTCGCCTTGCTTTTTCTGCTGGAATTGGTGGCCTTCTCTTTGGCTATGACACTGGAGTCATATCTGGGGCTATTTTATATATCAGAGATGATTTCAAAGCAGTGGATAGGAAGACTTGGCTTCAGGAAGCCATAGTGAGTATGGCTCTTGCTGGAGCAATCGTAGGAGCTGCAGTTGGTGGGTGGATTAACGATCGATTTGGAAGGAGAAAAGCTATTCTTCTTGCAGACACACTCTTCTTTATTGGCTCTGCTGTCATGGCTGCCGCTACCAATCCATCTATTCTCATTGTTGGTCGAGTTTTCGTTGGCCTTGGTGTTGGAATGGCCTCAATGGCATCTCCCTTATACATCTCTGAAGCTTCTCCAACTAGAGTTCGAGGTGCTTTAGTTAGTCTCAATGGCTTTCTCATAACTGGAGGACAATTCCTCTCCTACCTCATCAACTTGGCCTTCACAAAAGCACCAGGAACATGGAGATGGATGTTAGGAGCAGCAGTAGTACCAGCCCTGATACAAATCGTATTAATGATGATGCTGCCAGAATCACCGCGTTGGCTGTTCCGAAAGGGAAGAGAAGAAGAGGGTAAAGAAATTCTAAGGAAGATTTATCCACCCCAGGAAGTTGAAGCAGAAATTAATACTTTGAGGGAATCAGTTGAAATAGAAATCAAGGAAGCAGAGGCCACAGATAACATCAGCATAGTCAAAATGCTGAAAACTAAAACTGTGAGAAGAGGTTTGTATGCAGGAATGGGCCTTCAAATTTTCCAACAGTTTGTGGGGATCAACACTGTGATGTACTACAGTCCTACCATAGTTCAGTTAGCTGGTTTTGCATCCAACCGAACAGCACTTCTTCTGTCACTAGTCACATCTGGTCTCAATGCATTTGGTTCTATTTTGAGTATATACTTCATAGACAGAACAGGGAGGAAAAAGCTTGTGTTGTTCAGTTTGTGTGGTGTTGTGTTCTCCCTTGTTGTTCTAACCGTTGTGTTCCATCAGAGTACAACTCACTCCCCAATGGTTAGTGCACTCGAAACCTCTCACTTCAATAACACTTGCCCGGATTACCATTCAGCTGCGAACCCTGGTGGATGGGATTGCATGAAGTGCCTGAAGGCTTCTCCAAATTGTGGCTTCTGTGCTTCTGGAGCCAATAAGCTCTTACCTGGGGCATGTTTGATCTCCAATGACACCACAAAAGATCAGTGCCATGAAGAAGATAGACTATGGTACACCGTGGGGTGTCCTAGTAAATTTGGATGGCTTGCAATAGTAGGGCTTGCACTCTACATCATATTCTTCTCACCTGGGATGGGAACTGTGCCATGGGTTGTCAACTCTGAGATTTATCCCCTAAGATATCGAGGAATATGTGGAGGAATGGCATCCACATCCAATTGGGTCTCAAATCTTATTGTTGCTCAGTCCTTCCTATCATTGACACAAGCTATTGGGACCTCATGGACATTTATGATATTTATATTCATCACCATAGCTGCCATTATCTTTGTTATTATTTTCGTGCCCGAAACCAAAGGACTTCCAATGGAAGAAGTGGAGAAGATGTTGGAAGGAAGAGATCTCAACTTCAAGTTTTGGCAGAGAAGTTCTCACTGTGGAGAAGAAGTACCACCACAAAAGACTCAATCAAATTAA

Predicted protein sequences of Glyma05g27410

Limit To All Plant Sequences

>Glyma05g27410.1   sequence type=predicted peptide   gene model=Glyma05g27410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGGVEVDASAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGAILYIRDDFKAVDRKTWLQEAIVSMALAGAIVGAAVGGWINDRFGRRKAILLADTLFFIGSAVMAAATNPSILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYLINLAFTKAPGTWRWMLGAAVVPALIQIVLMMMLPESPRWLFRKGREEEGKEILRKIYPPQEVEAEINTLRESVEIEIKEAEATDNISIVKMLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTSGLNAFGSILSIYFIDRTGRKKLVLFSLCGVVFSLVVLTVVFHQSTTHSPMVSALETSHFNNTCPDYHSAANPGGWDCMKCLKASPNCGFCASGANKLLPGACLISNDTTKDQCHEEDRLWYTVGCPSKFGWLAIVGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGICGGMASTSNWVSNLIVAQSFLSLTQAIGTSWTFMIFIFITIAAIIFVIIFVPETKGLPMEEVEKMLEGRDLNFKFWQRSSHCGEEVPPQKTQSN*

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