Glyma05g27300 - SoyBase

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Report for Sequence Feature Glyma05g27300

Feature Type:	gene_model
Chromosome:	Gm05
Start:	33208560
stop:	33214571
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18360	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr4:10146141-10148386 REVERSE LENGTH=368	SoyBase	E_val: 0	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0010204	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008891	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycolate oxidase activity	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0538	KOG	Glycolate oxidase	JGI		ISS
PTHR10578	Panther	(S)-2-HYDROXY-ACID OXIDASE-RELATED	JGI		ISS
PF01070	PFAM	FMN-dependent dehydrogenase	JGI		ISS
UniRef100_D7EZN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycolate oxidase n=1 Tax=Mikania micrantha RepID=D7EZN6_9ASTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3F6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3F6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27300

Paralog	Evidence	Comments
Glyma08g10250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g141400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g27300

Limit To All Plant Sequences

>Glyma05g27300.2   sequence type=transcript   gene model=Glyma05g27300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAGAGACATGCTTCCCCAGTATTCCACCCACCTCGGAGGCCCAAGCCAAAGATCCTGCCGACATCGTAAGTAAATCTTATAAAGATGGAGATGATAACTAATGTTACCGAGTATGAGGCTATTGCAAAGGAAAAATTGCCAAAGATGGTTTATGACTACTATGCATCAGGGGCAGAGGATCAGTGGACTTTGAACGAGAACCGAAATGCGTTCTCAAGGATTCTGTTCCGGCCGCGTATTCTTGTTGATGTAAGCAAGATAGACTTGACTACAACTGTATTGGGCTTCAAAATATCAATGCCTATCATGATTGCTCCAACAGCCATGCAAAAGTTGGCTCACCCTGAAGGAGAATTAGCTACTGCTAGAGCAGCATCAGCTGCTGGCACAATCATGACACTATCCTCATGCGCTAGTTCCAGTGTTGAGGAGGTTGCTTCAACAGGTTCCGACATTCGATTTTTTCAACTTTATGTGCTTAAAGACAGAAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGAGCTGGTTTCAAGGCAATTGCCCTTACTGTGGACACTCCAATTCTTGGTCATAGGGAGGCTGATATCAAAAACAGATTGACATTGCCACTAAACCTGGTTTTGAAGAATTTTGAAGGATTGGATCTTGGAAAGCTGGACAAGACTAGTGACTCTGGTCTTGCCTCTTATGTTGCTGGACAAATTGATCCGTCACTCAACTGGAAGGATATCAAATGGCTTCAATCAATCACTTCATTGCCAATTTTAGTTAAGGGTGTACTTACTGTTGAAGATACAAGGATAGCCATACAAGCTGGAGCTGCTGGAATCATTGTTTCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTAGTTAAAGCTGCACAAGGAAAAATTCCAGTTTTTCTGGACAGTGGAATTCGCCGAGGGACAGATGTATTTAAAGCATTAGCTCTTGGAGCAGCCGGTGTATTCGTAAGTACATGAAAGTTTGATCACCATCATAGAAAATTAAAATGTTGAATGCTTAACTTCAGTATAGCTGTG

Coding sequences of Glyma05g27300

Limit To All Plant Sequences

>Glyma05g27300.1   sequence type=CDS   gene model=Glyma05g27300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATGATAACTAATGTTACCGAGTATGAGGCTATTGCAAAGGAAAAATTGCCAAAGATGGTTTATGACTACTATGCATCAGGGGCAGAGGATCAGTGGACTTTGAACGAGAACCGAAATGCGTTCTCAAGGATTCTGTTCCGGCCGCGTATTCTTGTTGATGTAAGCAAGATAGACTTGACTACAACTGTATTGGGCTTCAAAATATCAATGCCTATCATGATTGCTCCAACAGCCATGCAAAAGTTGGCTCACCCTGAAGGAGAATTAGCTACTGCTAGAGCAGCATCAGCTGCTGGCACAATCATGACACTATCCTCATGCGCTAGTTCCAGTGTTGAGGAGGTTGCTTCAACAGGTTCCGACATTCGATTTTTTCAACTTTATGTGCTTAAAGACAGAAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGAGCTGGTTTCAAGGCAATTGCCCTTACTGTGGACACTCCAATTCTTGGTCATAGGGAGGCTGATATCAAAAACAGATTGACATTGCCACTAAACCTGGTTTTGAAGAATTTTGAAGGATTGGATCTTGGAAAGCTGGACAAGACTAGTGACTCTGGTCTTGCCTCTTATGTTGCTGGACAAATTGATCCGTCACTCAACTGGAAGGATATCAAATGGCTTCAATCAATCACTTCATTGCCAATTTTAGTTAAGGGTGTACTTACTGTTGAAGATACAAGGATAGCCATACAAGCTGGAGCTGCTGGAATCATTGTTTCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTAGTTAAAGCTGCACAAGGAAAAATTCCAGTTTTTCTGGACAGTGGAATTCGCCGAGGGACAGATGTATTTAAAGCATTAGCTCTTGGAGCAGCCGGTGTATTCATTGGTAGACCTGTGGTGTTCTCATTGGCTGCTGATGGTGAGGCTGGTGTAAGAAAGGTACTTCAAATGCTTCGTGATGAGCTTGAATTAACTATGGCACTAAGTGGTTGTCGTTCACTCAAGGAGATAACTCGTGACCATGTTGTCACAGAGTGGGATCGTCCAAAATTTTCTCCCAAGTTATAA

>Glyma05g27300.2   sequence type=CDS   gene model=Glyma05g27300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATGATAACTAATGTTACCGAGTATGAGGCTATTGCAAAGGAAAAATTGCCAAAGATGGTTTATGACTACTATGCATCAGGGGCAGAGGATCAGTGGACTTTGAACGAGAACCGAAATGCGTTCTCAAGGATTCTGTTCCGGCCGCGTATTCTTGTTGATGTAAGCAAGATAGACTTGACTACAACTGTATTGGGCTTCAAAATATCAATGCCTATCATGATTGCTCCAACAGCCATGCAAAAGTTGGCTCACCCTGAAGGAGAATTAGCTACTGCTAGAGCAGCATCAGCTGCTGGCACAATCATGACACTATCCTCATGCGCTAGTTCCAGTGTTGAGGAGGTTGCTTCAACAGGTTCCGACATTCGATTTTTTCAACTTTATGTGCTTAAAGACAGAAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGAGCTGGTTTCAAGGCAATTGCCCTTACTGTGGACACTCCAATTCTTGGTCATAGGGAGGCTGATATCAAAAACAGATTGACATTGCCACTAAACCTGGTTTTGAAGAATTTTGAAGGATTGGATCTTGGAAAGCTGGACAAGACTAGTGACTCTGGTCTTGCCTCTTATGTTGCTGGACAAATTGATCCGTCACTCAACTGGAAGGATATCAAATGGCTTCAATCAATCACTTCATTGCCAATTTTAGTTAAGGGTGTACTTACTGTTGAAGATACAAGGATAGCCATACAAGCTGGAGCTGCTGGAATCATTGTTTCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTAGTTAAAGCTGCACAAGGAAAAATTCCAGTTTTTCTGGACAGTGGAATTCGCCGAGGGACAGATGTATTTAAAGCATTAGCTCTTGGAGCAGCCGGTGTATTCGTAAGTACATGA

Predicted protein sequences of Glyma05g27300

Limit To All Plant Sequences

>Glyma05g27300.1   sequence type=predicted peptide   gene model=Glyma05g27300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLNENRNAFSRILFRPRILVDVSKIDLTTTVLGFKISMPIMIAPTAMQKLAHPEGELATARAASAAGTIMTLSSCASSSVEEVASTGSDIRFFQLYVLKDRNVVAQLVRRAERAGFKAIALTVDTPILGHREADIKNRLTLPLNLVLKNFEGLDLGKLDKTSDSGLASYVAGQIDPSLNWKDIKWLQSITSLPILVKGVLTVEDTRIAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGKIPVFLDSGIRRGTDVFKALALGAAGVFIGRPVVFSLAADGEAGVRKVLQMLRDELELTMALSGCRSLKEITRDHVVTEWDRPKFSPKL*

>Glyma05g27300.2   sequence type=predicted peptide   gene model=Glyma05g27300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLNENRNAFSRILFRPRILVDVSKIDLTTTVLGFKISMPIMIAPTAMQKLAHPEGELATARAASAAGTIMTLSSCASSSVEEVASTGSDIRFFQLYVLKDRNVVAQLVRRAERAGFKAIALTVDTPILGHREADIKNRLTLPLNLVLKNFEGLDLGKLDKTSDSGLASYVAGQIDPSLNWKDIKWLQSITSLPILVKGVLTVEDTRIAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGKIPVFLDSGIRRGTDVFKALALGAAGVFVST*

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