SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18360 | AT | Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein | chr4:10146141-10148386 REVERSE LENGTH=368 | SoyBase | E_val: 0 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0010204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008891 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycolate oxidase activity | SoyBase | N/A | ISS |
| GO:0010181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0538 | KOG | Glycolate oxidase | JGI | ISS | |
| PTHR10578 | Panther | (S)-2-HYDROXY-ACID OXIDASE-RELATED | JGI | ISS | |
| PF01070 | PFAM | FMN-dependent dehydrogenase | JGI | ISS | |
| UniRef100_D7EZN6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycolate oxidase n=1 Tax=Mikania micrantha RepID=D7EZN6_9ASTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K3F6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3F6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g27300 not represented in the dataset |
Glyma05g27300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g10250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g141400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g27300.2 sequence type=transcript gene model=Glyma05g27300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGAGAGACATGCTTCCCCAGTATTCCACCCACCTCGGAGGCCCAAGCCAAAGATCCTGCCGACATCGTAAGTAAATCTTATAAAGATGGAGATGATAACTAATGTTACCGAGTATGAGGCTATTGCAAAGGAAAAATTGCCAAAGATGGTTTATGACTACTATGCATCAGGGGCAGAGGATCAGTGGACTTTGAACGAGAACCGAAATGCGTTCTCAAGGATTCTGTTCCGGCCGCGTATTCTTGTTGATGTAAGCAAGATAGACTTGACTACAACTGTATTGGGCTTCAAAATATCAATGCCTATCATGATTGCTCCAACAGCCATGCAAAAGTTGGCTCACCCTGAAGGAGAATTAGCTACTGCTAGAGCAGCATCAGCTGCTGGCACAATCATGACACTATCCTCATGCGCTAGTTCCAGTGTTGAGGAGGTTGCTTCAACAGGTTCCGACATTCGATTTTTTCAACTTTATGTGCTTAAAGACAGAAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGAGCTGGTTTCAAGGCAATTGCCCTTACTGTGGACACTCCAATTCTTGGTCATAGGGAGGCTGATATCAAAAACAGATTGACATTGCCACTAAACCTGGTTTTGAAGAATTTTGAAGGATTGGATCTTGGAAAGCTGGACAAGACTAGTGACTCTGGTCTTGCCTCTTATGTTGCTGGACAAATTGATCCGTCACTCAACTGGAAGGATATCAAATGGCTTCAATCAATCACTTCATTGCCAATTTTAGTTAAGGGTGTACTTACTGTTGAAGATACAAGGATAGCCATACAAGCTGGAGCTGCTGGAATCATTGTTTCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTAGTTAAAGCTGCACAAGGAAAAATTCCAGTTTTTCTGGACAGTGGAATTCGCCGAGGGACAGATGTATTTAAAGCATTAGCTCTTGGAGCAGCCGGTGTATTCGTAAGTACATGAAAGTTTGATCACCATCATAGAAAATTAAAATGTTGAATGCTTAACTTCAGTATAGCTGTG
>Glyma05g27300.1 sequence type=CDS gene model=Glyma05g27300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATGATAACTAATGTTACCGAGTATGAGGCTATTGCAAAGGAAAAATTGCCAAAGATGGTTTATGACTACTATGCATCAGGGGCAGAGGATCAGTGGACTTTGAACGAGAACCGAAATGCGTTCTCAAGGATTCTGTTCCGGCCGCGTATTCTTGTTGATGTAAGCAAGATAGACTTGACTACAACTGTATTGGGCTTCAAAATATCAATGCCTATCATGATTGCTCCAACAGCCATGCAAAAGTTGGCTCACCCTGAAGGAGAATTAGCTACTGCTAGAGCAGCATCAGCTGCTGGCACAATCATGACACTATCCTCATGCGCTAGTTCCAGTGTTGAGGAGGTTGCTTCAACAGGTTCCGACATTCGATTTTTTCAACTTTATGTGCTTAAAGACAGAAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGAGCTGGTTTCAAGGCAATTGCCCTTACTGTGGACACTCCAATTCTTGGTCATAGGGAGGCTGATATCAAAAACAGATTGACATTGCCACTAAACCTGGTTTTGAAGAATTTTGAAGGATTGGATCTTGGAAAGCTGGACAAGACTAGTGACTCTGGTCTTGCCTCTTATGTTGCTGGACAAATTGATCCGTCACTCAACTGGAAGGATATCAAATGGCTTCAATCAATCACTTCATTGCCAATTTTAGTTAAGGGTGTACTTACTGTTGAAGATACAAGGATAGCCATACAAGCTGGAGCTGCTGGAATCATTGTTTCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTAGTTAAAGCTGCACAAGGAAAAATTCCAGTTTTTCTGGACAGTGGAATTCGCCGAGGGACAGATGTATTTAAAGCATTAGCTCTTGGAGCAGCCGGTGTATTCATTGGTAGACCTGTGGTGTTCTCATTGGCTGCTGATGGTGAGGCTGGTGTAAGAAAGGTACTTCAAATGCTTCGTGATGAGCTTGAATTAACTATGGCACTAAGTGGTTGTCGTTCACTCAAGGAGATAACTCGTGACCATGTTGTCACAGAGTGGGATCGTCCAAAATTTTCTCCCAAGTTATAA >Glyma05g27300.2 sequence type=CDS gene model=Glyma05g27300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATGATAACTAATGTTACCGAGTATGAGGCTATTGCAAAGGAAAAATTGCCAAAGATGGTTTATGACTACTATGCATCAGGGGCAGAGGATCAGTGGACTTTGAACGAGAACCGAAATGCGTTCTCAAGGATTCTGTTCCGGCCGCGTATTCTTGTTGATGTAAGCAAGATAGACTTGACTACAACTGTATTGGGCTTCAAAATATCAATGCCTATCATGATTGCTCCAACAGCCATGCAAAAGTTGGCTCACCCTGAAGGAGAATTAGCTACTGCTAGAGCAGCATCAGCTGCTGGCACAATCATGACACTATCCTCATGCGCTAGTTCCAGTGTTGAGGAGGTTGCTTCAACAGGTTCCGACATTCGATTTTTTCAACTTTATGTGCTTAAAGACAGAAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGAGCTGGTTTCAAGGCAATTGCCCTTACTGTGGACACTCCAATTCTTGGTCATAGGGAGGCTGATATCAAAAACAGATTGACATTGCCACTAAACCTGGTTTTGAAGAATTTTGAAGGATTGGATCTTGGAAAGCTGGACAAGACTAGTGACTCTGGTCTTGCCTCTTATGTTGCTGGACAAATTGATCCGTCACTCAACTGGAAGGATATCAAATGGCTTCAATCAATCACTTCATTGCCAATTTTAGTTAAGGGTGTACTTACTGTTGAAGATACAAGGATAGCCATACAAGCTGGAGCTGCTGGAATCATTGTTTCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTAGTTAAAGCTGCACAAGGAAAAATTCCAGTTTTTCTGGACAGTGGAATTCGCCGAGGGACAGATGTATTTAAAGCATTAGCTCTTGGAGCAGCCGGTGTATTCGTAAGTACATGA
>Glyma05g27300.1 sequence type=predicted peptide gene model=Glyma05g27300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLNENRNAFSRILFRPRILVDVSKIDLTTTVLGFKISMPIMIAPTAMQKLAHPEGELATARAASAAGTIMTLSSCASSSVEEVASTGSDIRFFQLYVLKDRNVVAQLVRRAERAGFKAIALTVDTPILGHREADIKNRLTLPLNLVLKNFEGLDLGKLDKTSDSGLASYVAGQIDPSLNWKDIKWLQSITSLPILVKGVLTVEDTRIAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGKIPVFLDSGIRRGTDVFKALALGAAGVFIGRPVVFSLAADGEAGVRKVLQMLRDELELTMALSGCRSLKEITRDHVVTEWDRPKFSPKL* >Glyma05g27300.2 sequence type=predicted peptide gene model=Glyma05g27300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLNENRNAFSRILFRPRILVDVSKIDLTTTVLGFKISMPIMIAPTAMQKLAHPEGELATARAASAAGTIMTLSSCASSSVEEVASTGSDIRFFQLYVLKDRNVVAQLVRRAERAGFKAIALTVDTPILGHREADIKNRLTLPLNLVLKNFEGLDLGKLDKTSDSGLASYVAGQIDPSLNWKDIKWLQSITSLPILVKGVLTVEDTRIAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGKIPVFLDSGIRRGTDVFKALALGAAGVFVST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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