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Report for Sequence Feature Glyma05g27280

Feature Type:gene_model
Chromosome:Gm05
Start:33187987
stop:33190762
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g27280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30135AT Annotation by Michelle Graham. TAIR10: jasmonate-zim-domain protein 8 | chr1:10596516-10597095 FORWARD LENGTH=131 SoyBaseE_val: 1.00E-26ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF06200PFAM tify domain JGI ISS
PF09425PFAM Divergent CCT motif JGI ISS
UniRef100_I1K3F4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3F4_SOYBN SoyBaseE_val: 7.00E-93ISS
UniRef100_I3WTA4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Jasmonate ZIM domain protein f n=1 Tax=Nicotiana attenuata RepID=I3WTA4_NICAT SoyBaseE_val: 4.00E-32ISS

Expression Patterns of Glyma05g27280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27280
ParalogEvidenceComments
Glyma08g10220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g141200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g27280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g27280
>Glyma05g27280.2   sequence type=transcript   gene model=Glyma05g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTAACACTGTTTACCAGCCGAAGCCGATTTTTTTTGTGCTTTACGTGTTTAATTTAACTCAATTCTCTCAAAGAATATAGAAGATGAGAAAGAATTGCAAGTTGGAACTTCGCCTTTTTCCTCCCTCCCTCTCCGATCTTCGCCCCATGATGGAAGCAGAAGTGAGTGATAGCCCACAACAACAGGACCCTCACCATCAACAGCAACAACAACTACAACATCCGCTGACCATTTTCTATGATGGCAAGATTTGTGTCTCAGATGTCACAGAGCTTCAGGCCAGATCCATATTAATGCTAGCAAATAAAGAGACGGAGAGAAGGGTGATGACACCAACTGGGTCAGAACCATCTTCACCAATATTACTGCAATCACCTCATAATAACATGTATAGCCCCAGCACTGGACTTTCCATGAAAAGATCACTGCAGAGGTTTCTCCAGAAGAGGAAGAATCGTGTCCAAGAAACATCCCCATACCATCACTAGCTAATTAATTAAGTTAAATTATCAAAACCAAGGGGAAACAAATGAAAATTAATTTGGCTTGGTCGTTGGTTAGCTTGTTGCAAGACTATGATGAATGAAATGCCTTTTTTCCCAACACAGTTTGTGGATCAAGGGCTTGTAAATTAAGAGCGGCTATGATCGAAATCATACAACTTCTT
Coding sequences of Glyma05g27280
>Glyma05g27280.1   sequence type=CDS   gene model=Glyma05g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAGAATTGCAAGTTGGAACTTCGCCTTTTTCCTCCCTCCCTCTCCGATCTTCGCCCCATGATGGAAGCAGAAGTGAGTGATAGCCCACAACAACAGGACCCTCACCATCAACAGCAACAACAACTACAACATCCGCTGACCATTTTCTATGATGGCAAGATTTGTGTCTCAGATGTCACAGAGCTTCAGGCCAGATCCATATTAATGCTAGCAAATAAAGAGACGGAGAGAAGGGTGATGACACCAACTGGGTCAGAACCATCTTCACCAATATTACTGCAATCACCTCATAATAACATGTATAGCCCCAGCACTGGACTTTCCATGAAAAGATCACTGCAGAGGTTTCTCCAGAAGAGGAAGAATCGTGTCCAAGAAACATCCCCATACCATCACTAG

>Glyma05g27280.2   sequence type=CDS   gene model=Glyma05g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAGAATTGCAAGTTGGAACTTCGCCTTTTTCCTCCCTCCCTCTCCGATCTTCGCCCCATGATGGAAGCAGAAGTGAGTGATAGCCCACAACAACAGGACCCTCACCATCAACAGCAACAACAACTACAACATCCGCTGACCATTTTCTATGATGGCAAGATTTGTGTCTCAGATGTCACAGAGCTTCAGGCCAGATCCATATTAATGCTAGCAAATAAAGAGACGGAGAGAAGGGTGATGACACCAACTGGGTCAGAACCATCTTCACCAATATTACTGCAATCACCTCATAATAACATGTATAGCCCCAGCACTGGACTTTCCATGAAAAGATCACTGCAGAGGTTTCTCCAGAAGAGGAAGAATCGTGTCCAAGAAACATCCCCATACCATCACTAG
Predicted protein sequences of Glyma05g27280
>Glyma05g27280.1   sequence type=predicted peptide   gene model=Glyma05g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKNCKLELRLFPPSLSDLRPMMEAEVSDSPQQQDPHHQQQQQLQHPLTIFYDGKICVSDVTELQARSILMLANKETERRVMTPTGSEPSSPILLQSPHNNMYSPSTGLSMKRSLQRFLQKRKNRVQETSPYHH*

>Glyma05g27280.2   sequence type=predicted peptide   gene model=Glyma05g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKNCKLELRLFPPSLSDLRPMMEAEVSDSPQQQDPHHQQQQQLQHPLTIFYDGKICVSDVTELQARSILMLANKETERRVMTPTGSEPSSPILLQSPHNNMYSPSTGLSMKRSLQRFLQKRKNRVQETSPYHH*






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