Glyma05g27260 - SoyBase

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Report for Sequence Feature Glyma05g27260

Feature Type:	gene_model
Chromosome:	Gm05
Start:	33170216
stop:	33174405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30120	AT	Annotation by Michelle Graham. TAIR10: pyruvate dehydrogenase E1 beta \| chr1:10584350-10586477 REVERSE LENGTH=406	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010240	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid pyruvate dehydrogenase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004739	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity	SoyBase	N/A	ISS
KOG0524	KOG	Pyruvate dehydrogenase E1, beta subunit	JGI		ISS
PTHR11624	Panther	DEHYDROGENASE RELATED	JGI		ISS
PTHR11624:SF42	Panther		JGI		ISS
PF02779	PFAM	Transketolase, pyrimidine binding domain	JGI		ISS
PF02780	PFAM	Transketolase, C-terminal domain	JGI		ISS
UniRef100_E5RPJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate dehydrogenase n=1 Tax=Glycine max RepID=E5RPJ6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E5RPJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pyruvate dehydrogenase n=1 Tax=Glycine max RepID=E5RPJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g27260 not represented in the dataset	Glyma05g27260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27260

Paralog	Evidence	Comments
Glyma08g10200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g141000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g27260

Limit To All Plant Sequences

>Glyma05g27260.2   sequence type=transcript   gene model=Glyma05g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATCCTTTAAAAAAACTGAAAATTTCAAAAATATCCGGTGCCCCTTTTTCTTCTTATTTGCATAGCGTAATCTCATTTCCTTCGTGCAAAAATACCCTGCGACGGCCACCACCACCATAGCCACTTTTTTTGTTCGTCCCTGTATGTTCAAGATTTCTCACATCTCGGCCTCATTATTTGTTTAGATCCGGATTAGAGAATCCGTAAGTGTTTGTGTTTATTCCGGACTGTGCGTTCCGTAACATGGAGGTGCATGTCGAAATTGGTGAGGTGCAGGAAGCAACGACCCCACTATAAACGGGGTTAAGTCCAATCAGAGAAGGCAAAGGCATCATCGGTGATGGAAACTATGCTCACAAGTGACAGAGTAGAAGCAAAAGATTTTAATTTTAGTAATAACTAACATAATAAACTAGGTGAACGTAACTGCACAGACACAACTACTACATAAATCTTACCTTAATTTCTCCGCCCACTTCCCTCCTATAAATAAATCTTCCATTCTCTCTCTTCATTTCATCTCCATCTTTCTTGGGTGATCCAATGGCGACCCTTTTCCAGGGATTGGGAGTTGTGAACCCGTCATTGTCTTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCAGAGAAAAGATGGCATATTTGTAGTCAGATCTGATGCAAGGGTAAGCAGCAAGGTTCTGAAGGCCGGAGCTCGCAAGCATGAATTGTTGGTTACTAATGCAGTCGCAACAAAGGAAGGCAGTTCTGCGGCTTCTACATCAAAATCTGGGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGCGAAGATGTAGGTCACTATGGAGGATCCTACAAGGTGACTAAAGGCCTTGCCACAAAGTTTGGGGACCTTAGAGTTTTGGACACACCTATTGCTGAGAACTCCTTCACGGGCATGGGCATTGGGGCTGCCATGACTGGTCTGAGGCCAGTTGTTGAGGGCATGAACATGGGATTTCTACTTCTGGCATTTAACCAGATTTCTAACAATTGTGGCATGCTCCATTACACTTCTGGAGGCCAGTTTAAGATACCCATTGTCATTCGTGGACCTGGTGGAGTTGGGCGGCAACTTGGAGCAGAGCACTCGCAGCGATTGGAGTCATATTTTCAGTCAATCCCTGGAATCCAGATGGTGGCTTGCTCAACCCCTTACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGGAGTGAGAACCCTGTGATTCTTTTCGAGCATGTTTTGCTTTATAACCTCAAGGAGAGAATTCCAGATGAAGAGTATGTATTGTCACTTGAAGAAGCTGAGATGGTTAGGCCTGGGGAGCATGTTACAATATTAACGTACTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTGGTGAACAAGGGGTATGACCCTGAAGTAATTGATATCAGGTCTTTGAAACCATTCGATCTTCACACAATTGGGAACTCGGTGAAGAAGACACATCGTGTGCTAATTGTGGAAGAGTGTATGAGGACGGGTGGAATTGGGGCTAGTTTGACCGCTGCTATTACTGAAAATTTCCATGACTATTTGGATGCCCCTATAGTATGTTTATCCTCTCAGGATGTGCCAACTCCTTATGCTGGCACATTGGAGGAATGGACAGTGGTTCAACCTGCTCAAATTGTGACTGCAGTTGAGCAACTCTGCAAGTGATTGCTACAAAACACTAGCAATTAGGATATGGTTTTTGGTAAAGCTATTGTGCTTGTCAAATTAAGCTTGAATTTTCATCATGACTTTCTTTTCCTTTTATTTCTGAAGTCTATAGCCCGTAACTTTAAATTGTTGTTTAATTTCTGATAATCTTTGCAATTTTTTTTAAAGAGTATTTACAACTGCCAACCCAATCCAAATCTTTATCTACTTGTTCATCTGCATCATTTGTGTGGTGTGTGTAAGAGTTAGACAAAGCCTTAACTAGGGAGATATTTGTAGTCAGTGCTGAACTGCTGAAGCCAGCAAATATCTGTTCTTGTTTATTTTGAATTAACTCTTTTGGATGTAGTTACAGATTTTGAATATGCTATTCTATCCTAGTGTTAGGCTTCTGAGTTCTCGTGTTCTAATTGGAA

Coding sequences of Glyma05g27260

Limit To All Plant Sequences

>Glyma05g27260.1   sequence type=CDS   gene model=Glyma05g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCCTTTTCCAGGGATTGGGAGTTGTGAACCCGTCATTGTCTTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCGTACATCCCTCTCTGAGAGAAAAGATGGCATATTTGTAGTCAGATCTGATGCAAGGGTAAGCAGCAAGGTTCTGAAGGCCGGAGCTCGCAAGCATGAATTGTTGGTTACTAATGCAGTCGCAACAAAGGAAGGCAGTTCTGCGGCTTCTACATCAAAATCTGGGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGCGAAGATGTAGGTCACTATGGAGGATCCTACAAGGTGACTAAAGGCCTTGCCACAAAGTTTGGGGACCTTAGAGTTTTGGACACACCTATTGCTGAGAACTCCTTCACGGGCATGGGCATTGGGGCTGCCATGACTGGTCTGAGGCCAGTTGTTGAGGGCATGAACATGGGATTTCTACTTCTGGCATTTAACCAGATTTCTAACAATTGTGGCATGCTCCATTACACTTCTGGAGGCCAGTTTAAGATACCCATTGTCATTCGTGGACCTGGTGGAGTTGGGCGGCAACTTGGAGCAGAGCACTCGCAGCGATTGGAGTCATATTTTCAGTCAATCCCTGGAATCCAGATGGTGGCTTGCTCAACCCCTTACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGGAGTGAGAACCCTGTGATTCTTTTCGAGCATGTTTTGCTTTATAACCTCAAGGAGAGAATTCCAGATGAAGAGTATGTATTGTCACTTGAAGAAGCTGAGATGGTTAGGCCTGGGGAGCATGTTACAATATTAACGTACTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTGGTGAACAAGGGGTATGACCCTGAAGTAATTGATATCAGGTCTTTGAAACCATTCGATCTTCACACAATTGGGAACTCGGTGAAGAAGACACATCGTGTGCTAATTGTGGAAGAGTGTATGAGGACGGGTGGAATTGGGGCTAGTTTGACCGCTGCTATTACTGAAAATTTCCATGACTATTTGGATGCCCCTATAGTATGTTTATCCTCTCAGGATGTGCCAACTCCTTATGCTGGCACATTGGAGGAATGGACAGTGGTTCAACCTGCTCAAATTGTGACTGCAGTTGAGCAACTCTGCAAGTGA

>Glyma05g27260.2   sequence type=CDS   gene model=Glyma05g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCCTTTTCCAGGGATTGGGAGTTGTGAACCCGTCATTGTCTTCTTCCAACTCCAACAACTTCCTGCTTCCTTCTCAGAGAAAAGATGGCATATTTGTAGTCAGATCTGATGCAAGGGTAAGCAGCAAGGTTCTGAAGGCCGGAGCTCGCAAGCATGAATTGTTGGTTACTAATGCAGTCGCAACAAAGGAAGGCAGTTCTGCGGCTTCTACATCAAAATCTGGGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGCGAAGATGTAGGTCACTATGGAGGATCCTACAAGGTGACTAAAGGCCTTGCCACAAAGTTTGGGGACCTTAGAGTTTTGGACACACCTATTGCTGAGAACTCCTTCACGGGCATGGGCATTGGGGCTGCCATGACTGGTCTGAGGCCAGTTGTTGAGGGCATGAACATGGGATTTCTACTTCTGGCATTTAACCAGATTTCTAACAATTGTGGCATGCTCCATTACACTTCTGGAGGCCAGTTTAAGATACCCATTGTCATTCGTGGACCTGGTGGAGTTGGGCGGCAACTTGGAGCAGAGCACTCGCAGCGATTGGAGTCATATTTTCAGTCAATCCCTGGAATCCAGATGGTGGCTTGCTCAACCCCTTACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGGAGTGAGAACCCTGTGATTCTTTTCGAGCATGTTTTGCTTTATAACCTCAAGGAGAGAATTCCAGATGAAGAGTATGTATTGTCACTTGAAGAAGCTGAGATGGTTAGGCCTGGGGAGCATGTTACAATATTAACGTACTCCAGGATGAGGTATCATGTCATGCAAGCTGCTAAGACACTGGTGAACAAGGGGTATGACCCTGAAGTAATTGATATCAGGTCTTTGAAACCATTCGATCTTCACACAATTGGGAACTCGGTGAAGAAGACACATCGTGTGCTAATTGTGGAAGAGTGTATGAGGACGGGTGGAATTGGGGCTAGTTTGACCGCTGCTATTACTGAAAATTTCCATGACTATTTGGATGCCCCTATAGTATGTTTATCCTCTCAGGATGTGCCAACTCCTTATGCTGGCACATTGGAGGAATGGACAGTGGTTCAACCTGCTCAAATTGTGACTGCAGTTGAGCAACTCTGCAAGTGA

Predicted protein sequences of Glyma05g27260

Limit To All Plant Sequences

>Glyma05g27260.1   sequence type=predicted peptide   gene model=Glyma05g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLFQGLGVVNPSLSSSNSNNFLLPSRTSLSERKDGIFVVRSDARVSSKVLKAGARKHELLVTNAVATKEGSSAASTSKSGHELLLFEALREGLEEEMERDPCVCVMGEDVGHYGGSYKVTKGLATKFGDLRVLDTPIAENSFTGMGIGAAMTGLRPVVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCK*

>Glyma05g27260.2   sequence type=predicted peptide   gene model=Glyma05g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLFQGLGVVNPSLSSSNSNNFLLPSQRKDGIFVVRSDARVSSKVLKAGARKHELLVTNAVATKEGSSAASTSKSGHELLLFEALREGLEEEMERDPCVCVMGEDVGHYGGSYKVTKGLATKFGDLRVLDTPIAENSFTGMGIGAAMTGLRPVVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCK*

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