Glyma05g27250 - SoyBase

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Report for Sequence Feature Glyma05g27250

Feature Type:	gene_model
Chromosome:	Gm05
Start:	33153928
stop:	33156290
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30100	AT	Annotation by Michelle Graham. TAIR10: nine-cis-epoxycarotenoid dioxygenase 5 \| chr1:10571383-10573152 FORWARD LENGTH=589	SoyBase	E_val: 0	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009688	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0045549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity	SoyBase	N/A	ISS
KOG1285	KOG	Beta, beta-carotene 15,15'-dioxygenase and related enzymes	JGI		ISS
PTHR10543	Panther	CARTENOID OXYGENASE	JGI		ISS
PTHR10543:SF1	Panther	9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED	JGI		ISS
PF03055	PFAM	Retinal pigment epithelial membrane protein	JGI		ISS
UniRef100_G0Z352	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 9-cis-epoxycarotenoid dioxygenase 1 n=2 Tax=Glycine max RepID=G0Z352_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G0Z352	UniRef	Annotation by Michelle Graham. Best UniRef hit: 9-cis-epoxycarotenoid dioxygenase 1 n=2 Tax=Glycine max RepID=G0Z352_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27250

Paralog	Evidence	Comments
Glyma08g10190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g140900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g27250

Limit To All Plant Sequences

>Glyma05g27250.1   sequence type=CDS   gene model=Glyma05g27250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCACTCAATTCGAGCACTTGGGCCAAACCTCAATTCCATCACCCTCTCTCTTCTTCTTCCTCATTATTAACAGACATGGGCTTCCCCACTAGGTTTCCCAAGAAGCCCATTGGAGAGGTGGTGAATTGTGCTCTACACTCCCCCCCAGTGACCCATTTTCCAAACCAACCCTTCACAAAAACACTCCAAATTACCAAAGAACCTACCTACCCCCCCGCGGAAAGGCCTCAGTGGAACCCATTCCAAAAAGCCGCCGCCAAGGCCCTCGACATGTTCGAGAGCGCGTTGCTCTCACGCGAGCTCAGCCAACCCCTCCCCAAAACCACTGACCCACGCGTCCAAATTGCCGGTAACTTCGCCCCCGTTCCGGAACACCCCGTCCAACATTCCCTCCCCGTTATTGGCACAATCCCAGACGCAGTTAACGGCGTTTATCTCCGTAACGGCGCCAACCCATTGTTCCATCCCAAAGCCGGTCACCACCTCTTCGACGGCGACGGAATGGTCCACGCCGTTAAAATCAATCACGGCACCGCCAGCTACGCCTGCCGCTTCACCGAAACGCAGCGTCTCATGCAGGAGCACGCATTGGGAAAACCGGTGTTTCCGAAAGCAATCGGCGAGCTCCACGGCCATTCCGGCATCGCGAGGCTGATGCTGTTCTACGCGAGAGGCTTGTGCGGCATCGTCGACCACCGCAGCGGCGCCGGCTCCGCCAACGCCGGCCTGGTCTTCTTCAACGGAAAACTCCTCGCCATGTCGGAGGACGACCTCCCCTACGAGCTCCGAATCACCGCCTCCGGCGACCTCGAAACAATCGGTCGCTACAGCTTCCACGACCAGCTCAATTCCTCCATGATCGCGCATCCGAAGGTGGATCCTATCTCCGGCGAGCTTTTCACTCTAAGCTACGACGTCACGAGCAAGTACCTCAAATACTTCCGTTTCTCGCCGGAGGAGGAGAAGAAGTCGCCGGACGTGGAAATCCCCCTCGGCGCCGCGACGATGACGCACGACTTCGCGATCACGGAGAATTTCGTCGTGATCCCAGACCAGAAGGTGGTGTTCAAGCTCGGCGAAATGATAAAAGGAGGATCGCCGGTGATCTACGACGACGAGAAGAAATCGCGGTTCGGAATTCTTCCGAAGTACGCCTCCGACGCGTCGAGCATCGTGTGGGTGGAGTCACCAGACACGTTCTTCTTCCACTTCTGGAACGCGTGGGAGGAACGCGAGACGGACGAAGTTGTAGTAATAGGTTCCTGCATGACGCCACCGGATTCAATATTCAAAGACACCGAAGAGAGTCTGAAAAGTGTCTTAACAGAAATAAGGCTTAACATAAGAAGCGGGAAGTCGACGCGGCGTGTGGTGGTAGAGGAAATGAACCTGGAGGCGGGGATGGTGAACCGGAACAGGCTGGGGAGAAAAACCCGGTTCGCGTACTTGTGCATAGCGGAACCGTGGCCGAAGGTGTCGGGATTCGCGAAGGTGGACCTGGAGAGTGGGGAAGTGAAGAGGCACGAGTACGGAGAGAGAAGGTTCGGGGGAGAGCCATTCTTTTTGCCAACACGTGGAGAGAATGGGAATGAGGATGAAGGGTACGTGATGGCTTTTGTGCATGACGAGGTGACGTGGCAGTCCGAGTTGCAGATTCTGAATGCACTTGATTTGAAGTTGGAGGCCACCATCATGCTGCCTTCCAGAGTGCCCTATGGCTTTCATGGCACGTTTGTGGAGGCTATGGATTTGCCCCAGTGA

Predicted protein sequences of Glyma05g27250

Limit To All Plant Sequences

>Glyma05g27250.1   sequence type=predicted peptide   gene model=Glyma05g27250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALNSSTWAKPQFHHPLSSSSSLLTDMGFPTRFPKKPIGEVVNCALHSPPVTHFPNQPFTKTLQITKEPTYPPAERPQWNPFQKAAAKALDMFESALLSRELSQPLPKTTDPRVQIAGNFAPVPEHPVQHSLPVIGTIPDAVNGVYLRNGANPLFHPKAGHHLFDGDGMVHAVKINHGTASYACRFTETQRLMQEHALGKPVFPKAIGELHGHSGIARLMLFYARGLCGIVDHRSGAGSANAGLVFFNGKLLAMSEDDLPYELRITASGDLETIGRYSFHDQLNSSMIAHPKVDPISGELFTLSYDVTSKYLKYFRFSPEEEKKSPDVEIPLGAATMTHDFAITENFVVIPDQKVVFKLGEMIKGGSPVIYDDEKKSRFGILPKYASDASSIVWVESPDTFFFHFWNAWEERETDEVVVIGSCMTPPDSIFKDTEESLKSVLTEIRLNIRSGKSTRRVVVEEMNLEAGMVNRNRLGRKTRFAYLCIAEPWPKVSGFAKVDLESGEVKRHEYGERRFGGEPFFLPTRGENGNEDEGYVMAFVHDEVTWQSELQILNALDLKLEATIMLPSRVPYGFHGTFVEAMDLPQ*

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