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Report for Sequence Feature Glyma05g27240

Feature Type:gene_model
Chromosome:Gm05
Start:33101846
stop:33110659
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g27240
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46210AT Annotation by Michelle Graham. TAIR10: cullin4 | chr5:18731569-18736653 REVERSE LENGTH=792 SoyBaseE_val: 0ISS
GO:0000209GO-bp Annotation by Michelle Graham. GO Biological Process: protein polyubiquitination SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0007049GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009880GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010072GO-bp Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification SoyBaseN/AISS
GO:0010100GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis SoyBaseN/AISS
GO:0010154GO-bp Annotation by Michelle Graham. GO Biological Process: fruit development SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0048575GO-bp Annotation by Michelle Graham. GO Biological Process: short-day photoperiodism, flowering SoyBaseN/AISS
GO:0048608GO-bp Annotation by Michelle Graham. GO Biological Process: reproductive structure development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0031461GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cullin-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0031625GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding SoyBaseN/AISS
KOG2167 KOG Cullins JGI ISS
PTHR11932Panther CULLIN JGI ISS
PTHR11932:SF53Panther SUBFAMILY NOT NAMED JGI ISS
PF00888PFAM Cullin family JGI ISS
PF10557PFAM Cullin protein neddylation domain JGI ISS
UniRef100_G7IP77UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cullin n=1 Tax=Medicago truncatula RepID=G7IP77_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K3E9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3E9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g27240
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g27240 not represented in the dataset
Glyma05g27240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27240
ParalogEvidenceComments
Glyma08g10180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27240 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g140800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g27240
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g27240
>Glyma05g27240.1   sequence type=CDS   gene model=Glyma05g27240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAATACGAAACTGTCACCGCCTATGAAGAAGGCGAAATCTATCGACTCCAAGAACGACGACGCCGTTTTGAAATCCCCCGCCGCCGCTTCCGATGACCCCAATGCGCCCGCTCTCGTCGCCGCCAATCTGTCTCGCAAAAAAGCCACTCCTCCCCATCCCCCCAAGAAGCTCCTCATTAAGTTCCACAAAGGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTCTTGAAGCAACCTGTTTCTTGTGACTTGGAGAATCTTTATCAGGCTGTGAATGATCTTTGCCTTTACAAAATGGGGGGAAATCTTTATCAACGAATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCACTGCAGTCTTTAGTTGGCCAAAGCCCAGATTTGATTGTTTTTCTATCGCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTTTCTGGATAGGACGTATGTGAAACAAACAACAAATGTACAGTCATTATGGGACATGGGTTTGCAACTTTTCTGCAAATATCTTTCTCTATCTCCAGAAGTAGAACATAAAACTGTTACTGGTCTTCTTCGTATGATCGGAAGTGAAAGATCAGGTGAATCAGTGGATAGAACTCTTCTAAATCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAACCTTTGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGACAAGATTGCAAGAGGAACATGAAAGATGTTTGTTGTACTTGGATGCAAGTACTAGGAAACCATTGATAGCAACTGCGGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTTACTGTGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGCACTCGCTCTTTTCAAGGGTCAATGCTCTTGAATCACTGAAGCAGGCCCTTAGTTCATACATCAGGAGAACTGGGCAGGGCATTGTTATGGATGAGGAGAAAGATAAAGATATGGTCTCATCCCTTCTTGAATTTAAGGCTTCTCTTGACACAATATGGGAAGAAAGCTTTTTCAAGAATGAAGCTTTCAGCAATTCAATTAAAGATGCATTTGAGTATCTTATCAATCTTCGTCAGAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCAGGTAATAAGGGTACTTCTGAAGAGGAACTGGAGGCTACACTTGATAAAGTCCTGGTGTTATTCAGGTTCATTCAGGGCAAGGATGTATTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGACGCTGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACTACAGGGCACTGGCCAACATATCCGCCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGCAAATACAGTGGAAGACGTCTGATGTGGCAAAATTCACTAGGTCATTGTGTCTTGAAGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATATCAAAGATGCTACTGGTATTGAGGACAAGGAACTCAGAAGGACTCTGCAATCACTAGCTTGTGGTAAAGTTCGTGTCCTACAAAAGATGCCCAAAGGAAGAGATGTGGAGGACGATGACTTATTTGTTTTTAATGATGGGTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCAATTCAATTGAAGGAGACAGTCGAGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTGAAATTCCCAATAAAACCAGCTGATTTGAAAAAAAGGATTGAAAGCCTCATTGACAGGGAGTATCTAGAGAGGGACAAGAGCAATCCTCAAATATACAATTACCTCGCATAA
Predicted protein sequences of Glyma05g27240
>Glyma05g27240.1   sequence type=predicted peptide   gene model=Glyma05g27240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNTKLSPPMKKAKSIDSKNDDAVLKSPAAASDDPNAPALVAANLSRKKATPPHPPKKLLIKFHKGIPTLPPNFEEDTWAKLKSAIGAIFLKQPVSCDLENLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLIVFLSLVERCWQDLCDQMLMIRGIALFLDRTYVKQTTNVQSLWDMGLQLFCKYLSLSPEVEHKTVTGLLRMIGSERSGESVDRTLLNHLLKMFTALGIYAETFEKPFLECTSEFYAAEGMKYMQQSDAPDYLKHVETRLQEEHERCLLYLDASTRKPLIATAEKQLLERHIPAILDKGFTVLMDGNRIEDLQRMHSLFSRVNALESLKQALSSYIRRTGQGIVMDEEKDKDMVSSLLEFKASLDTIWEESFFKNEAFSNSIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEATLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINDSFKQSSQARSKLASGIEMSVHVLTTGHWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGRKELAVSLFQTVVLMLFNDAEKLSLQDIKDATGIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDDDLFVFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFHDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA*






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