Glyma05g27090 - SoyBase

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Report for Sequence Feature Glyma05g27090

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32975399
stop:	32980939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23170	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF2359, transmembrane \| chr1:8212724-8215516 FORWARD LENGTH=615	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4467	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13448	Panther	UNCHARACTERIZED	JGI		ISS
PF10151	PFAM	Uncharacterised conserved protein (DUF2359)	JGI		ISS
UniRef100_I1K3E1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3E1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9S791	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G70770 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S791_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27090

Paralog	Evidence	Comments
Glyma08g10070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g139900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g27090

Limit To All Plant Sequences

>Glyma05g27090.2   sequence type=transcript   gene model=Glyma05g27090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTCCGGGGCGAGAACGAGGTCAATTTCAGGAAGTCAACTCTTTGAAAAATCGAAAATTCCCCTTTTCGAATTTCTTCTTCCTCTCCTCCTTCTACCATTTTCCTTTCACTTTCCATCACTTTCTCTCGTTTCCCCTTCGCAATTTTCCCCTCGGAAGAGACATCGAAGAAAATCACGTCACGGCAATGGAGGAAAAGCACGCAGCAGCCAATGAATCTGCACACGCCGAATCCAACGGCGTCTCTCACGGCGCCGACCACGGTTGGCAGAAGGTGACCTACGCTAAGAAGCAGAAGAAGAAGACCGTTAACGCCGCCAACAGCGCCGATTCCCGTGCGAATTCCAACAAGCTCGTTCCGAACGGCACGCTGTCCGGCAACGATGGCGTTTTCCGGTCGCTCGAGCTGCAGTCGGAGGACCGGCGCCGGAAAATTGTGGAGGCGAAGAAGCTGGCCGATGCCGCGTACGACGACGAAGACGCGCCGCTCAGATCGAAGCAGCGGCACCACGACGACGACGAATACGACTACGATGACGAGAATGTGGACCGTTCTGCGGAGAACGGGAAGGCCGAGGAGGCGAAGAAGGTGAAGCAGAAGAAGCCGAAGAAGCCTAAGGTGACGGTGGCGGAGGCGGCGGCGAAGATCGACGCCGCTGATCTGGGCGCTTTCCTCGTGGAGATATCGGGATCGTTCGAGGAGCAGCAGGATATATTGATGATGCGATTCACTGATTACTTTGGGCGTGCTTTTTCTGCTGTGACCGCATCTCAGTTTCCCTGGGTGAAATTGTTCAGGGAGTCAACTGTGGCTAAGATCACCGATACACCACTTTCTCACATATCTGATGCTGTATATAAAACATCAATGGACTGGATTAACCAACGTTCTCCTGAGGCACTTAGTACCTTTCTGATTTGGTCTTTAGATAGCATTCTTGCTGACTTGGGTAGCCAGCAAAATGTGGCCAAGGGTTCCAAAAAGGCCGTGCAACAAGTGTCCTCAAAATCTCAGGTTGCAATGTTCGTTGTTTTAGCAATGGTATTGCGTCGGAAGCCTGATGCTCTTATATCTGTATTGCCCACATTGAGGGAGAGTACAAAGTATCAAGGGCTAGATAAGCTTCCAGTCATTGTATGGATGATAGCTCAGGCTGCTGTAGGAGATCTCTCAGTAGGTTTGTATGCTTGGGCACGGAATCTCCTACCCATAGTTATTGGCAAAAGTGGTAACCCCCAATCCAGGGATTTGGTTTTGCAGCTAGTGGAAAAAATTTTGTCTACCCCCAAAGCCCGACCTGTTTTAGTAAACAGTGCTGTGAGAAAAGGGGAACGATTAATTCCTTCTTCCGCGTTTGAAATTTTGGTCCGGGTTACTTTCCCTCCATCTTCAACTAGAGTAAAGGCTACTGAAAGATTTGAGGCCATATATCCCACTCTGAAAGAGGTGGCTCTTGGAGGTTCTGCTGGAAGTAAAGCAATGAAACAAGTTGCACTGCAGATATTCAGTTTTGCTATCAAAGCAGCTGGAGAAAGTATGCAAACCTGATTTTTTTT

Coding sequences of Glyma05g27090

Limit To All Plant Sequences

>Glyma05g27090.1   sequence type=CDS   gene model=Glyma05g27090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAAGCACGCAGCAGCCAATGAATCTGCACACGCCGAATCCAACGGCGTCTCTCACGGCGCCGACCACGGTTGGCAGAAGGTGACCTACGCTAAGAAGCAGAAGAAGAAGACCGTTAACGCCGCCAACAGCGCCGATTCCCGTGCGAATTCCAACAAGCTCGTTCCGAACGGCACGCTGTCCGGCAACGATGGCGTTTTCCGGTCGCTCGAGCTGCAGTCGGAGGACCGGCGCCGGAAAATTGTGGAGGCGAAGAAGCTGGCCGATGCCGCGTACGACGACGAAGACGCGCCGCTCAGATCGAAGCAGCGGCACCACGACGACGACGAATACGACTACGATGACGAGAATGTGGACCGTTCTGCGGAGAACGGGAAGGCCGAGGAGGCGAAGAAGGTGAAGCAGAAGAAGCCGAAGAAGCCTAAGGTGACGGTGGCGGAGGCGGCGGCGAAGATCGACGCCGCTGATCTGGGCGCTTTCCTCGTGGAGATATCGGGATCGTTCGAGGAGCAGCAGGATATATTGATGATGCGATTCACTGATTACTTTGGGCGTGCTTTTTCTGCTGTGACCGCATCTCAGTTTCCCTGGGTGAAATTGTTCAGGGAGTCAACTGTGGCTAAGATCACCGATACACCACTTTCTCACATATCTGATGCTGTATATAAAACATCAATGGACTGGATTAACCAACGTTCTCCTGAGGCACTTAGTACCTTTCTGATTTGGTCTTTAGATAGCATTCTTGCTGACTTGGGTAGCCAGCAAAATGTGGCCAAGGGTTCCAAAAAGGCCGTGCAACAAGTGTCCTCAAAATCTCAGGTTGCAATGTTCGTTGTTTTAGCAATGGTATTGCGTCGGAAGCCTGATGCTCTTATATCTGTATTGCCCACATTGAGGGAGAGTACAAAGTATCAAGGGCTAGATAAGCTTCCAGTCATTGTATGGATGATAGCTCAGGCTGCTGTAGGAGATCTCTCAGTAGGTTTGTATGCTTGGGCACGGAATCTCCTACCCATAGTTATTGGCAAAAGTGGTAACCCCCAATCCAGGGATTTGGTTTTGCAGCTAGTGGAAAAAATTTTGTCTACCCCCAAAGCCCGACCTGTTTTAGTAAACAGTGCTGTGAGAAAAGGGGAACGATTAATTCCTTCTTCCGCGTTTGAAATTTTGGTCCGGGTTACTTTCCCTCCATCTTCAACTAGAGTAAAGGCTACTGAAAGATTTGAGGCCATATATCCCACTCTGAAAGAGGTGGCTCTTGGAGGTTCTGCTGGAAGTAAAGCAATGAAACAAGTTGCACTGCAGATATTCAGTTTTGCTATCAAAGCAGCTGGAGAAAATAATCCCGAGTTATCAAAAGAAGCAGCTGGTATTTTTATTTGGTGTTTGAGTCAAAACACTGAATGCTACAAGCAATGGGAAAAAGTTTATCAGGACAACATTGAAGCAAGTGTTTCAGTTCTGGAGAAGCTTTCTGATGATTGGAAGGAGTTATCAACAAAATTGTCTCCTCATGATCCACTGAGGGATACCATAAAGAACTTGAAGCAAAAGAATGAGAAAGTATTGGACTCTGAGACTGATGCTGCTCGTCATGCACACTTCAAGGACGCCGATAAATATTGCAAGATAATCTTAGGAAGAGTTTCGCGAAGCCATGGGTGCATGACTTGTTTAACCTTTACAGTTCTTGCTTTGGCTGTGGGTGCTGCTGTTTCCTTGTCCCCCAATTTGGAATCTTTGGATTTTAAGAAGCTCTCTGAACTTTTCAACGTTCAGCACTGA

>Glyma05g27090.2   sequence type=CDS   gene model=Glyma05g27090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAAGCACGCAGCAGCCAATGAATCTGCACACGCCGAATCCAACGGCGTCTCTCACGGCGCCGACCACGGTTGGCAGAAGGTGACCTACGCTAAGAAGCAGAAGAAGAAGACCGTTAACGCCGCCAACAGCGCCGATTCCCGTGCGAATTCCAACAAGCTCGTTCCGAACGGCACGCTGTCCGGCAACGATGGCGTTTTCCGGTCGCTCGAGCTGCAGTCGGAGGACCGGCGCCGGAAAATTGTGGAGGCGAAGAAGCTGGCCGATGCCGCGTACGACGACGAAGACGCGCCGCTCAGATCGAAGCAGCGGCACCACGACGACGACGAATACGACTACGATGACGAGAATGTGGACCGTTCTGCGGAGAACGGGAAGGCCGAGGAGGCGAAGAAGGTGAAGCAGAAGAAGCCGAAGAAGCCTAAGGTGACGGTGGCGGAGGCGGCGGCGAAGATCGACGCCGCTGATCTGGGCGCTTTCCTCGTGGAGATATCGGGATCGTTCGAGGAGCAGCAGGATATATTGATGATGCGATTCACTGATTACTTTGGGCGTGCTTTTTCTGCTGTGACCGCATCTCAGTTTCCCTGGGTGAAATTGTTCAGGGAGTCAACTGTGGCTAAGATCACCGATACACCACTTTCTCACATATCTGATGCTGTATATAAAACATCAATGGACTGGATTAACCAACGTTCTCCTGAGGCACTTAGTACCTTTCTGATTTGGTCTTTAGATAGCATTCTTGCTGACTTGGGTAGCCAGCAAAATGTGGCCAAGGGTTCCAAAAAGGCCGTGCAACAAGTGTCCTCAAAATCTCAGGTTGCAATGTTCGTTGTTTTAGCAATGGTATTGCGTCGGAAGCCTGATGCTCTTATATCTGTATTGCCCACATTGAGGGAGAGTACAAAGTATCAAGGGCTAGATAAGCTTCCAGTCATTGTATGGATGATAGCTCAGGCTGCTGTAGGAGATCTCTCAGTAGGTTTGTATGCTTGGGCACGGAATCTCCTACCCATAGTTATTGGCAAAAGTGGTAACCCCCAATCCAGGGATTTGGTTTTGCAGCTAGTGGAAAAAATTTTGTCTACCCCCAAAGCCCGACCTGTTTTAGTAAACAGTGCTGTGAGAAAAGGGGAACGATTAATTCCTTCTTCCGCGTTTGAAATTTTGGTCCGGGTTACTTTCCCTCCATCTTCAACTAGAGTAAAGGCTACTGAAAGATTTGAGGCCATATATCCCACTCTGAAAGAGGTGGCTCTTGGAGGTTCTGCTGGAAGTAAAGCAATGAAACAAGTTGCACTGCAGATATTCAGTTTTGCTATCAAAGCAGCTGGAGAAAGTATGCAAACCTGA

Predicted protein sequences of Glyma05g27090

Limit To All Plant Sequences

>Glyma05g27090.1   sequence type=predicted peptide   gene model=Glyma05g27090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKHAAANESAHAESNGVSHGADHGWQKVTYAKKQKKKTVNAANSADSRANSNKLVPNGTLSGNDGVFRSLELQSEDRRRKIVEAKKLADAAYDDEDAPLRSKQRHHDDDEYDYDDENVDRSAENGKAEEAKKVKQKKPKKPKVTVAEAAAKIDAADLGAFLVEISGSFEEQQDILMMRFTDYFGRAFSAVTASQFPWVKLFRESTVAKITDTPLSHISDAVYKTSMDWINQRSPEALSTFLIWSLDSILADLGSQQNVAKGSKKAVQQVSSKSQVAMFVVLAMVLRRKPDALISVLPTLRESTKYQGLDKLPVIVWMIAQAAVGDLSVGLYAWARNLLPIVIGKSGNPQSRDLVLQLVEKILSTPKARPVLVNSAVRKGERLIPSSAFEILVRVTFPPSSTRVKATERFEAIYPTLKEVALGGSAGSKAMKQVALQIFSFAIKAAGENNPELSKEAAGIFIWCLSQNTECYKQWEKVYQDNIEASVSVLEKLSDDWKELSTKLSPHDPLRDTIKNLKQKNEKVLDSETDAARHAHFKDADKYCKIILGRVSRSHGCMTCLTFTVLALAVGAAVSLSPNLESLDFKKLSELFNVQH*

>Glyma05g27090.2   sequence type=predicted peptide   gene model=Glyma05g27090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKHAAANESAHAESNGVSHGADHGWQKVTYAKKQKKKTVNAANSADSRANSNKLVPNGTLSGNDGVFRSLELQSEDRRRKIVEAKKLADAAYDDEDAPLRSKQRHHDDDEYDYDDENVDRSAENGKAEEAKKVKQKKPKKPKVTVAEAAAKIDAADLGAFLVEISGSFEEQQDILMMRFTDYFGRAFSAVTASQFPWVKLFRESTVAKITDTPLSHISDAVYKTSMDWINQRSPEALSTFLIWSLDSILADLGSQQNVAKGSKKAVQQVSSKSQVAMFVVLAMVLRRKPDALISVLPTLRESTKYQGLDKLPVIVWMIAQAAVGDLSVGLYAWARNLLPIVIGKSGNPQSRDLVLQLVEKILSTPKARPVLVNSAVRKGERLIPSSAFEILVRVTFPPSSTRVKATERFEAIYPTLKEVALGGSAGSKAMKQVALQIFSFAIKAAGESMQT*

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