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Report for Sequence Feature Glyma05g27081

Feature Type:gene_model
Chromosome:Gm05
Start:32973026
stop:32975141
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g27081
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70760AT Annotation by Michelle Graham. TAIR10: inorganic carbon transport protein-related | chr1:26687267-26688201 FORWARD LENGTH=191 SoyBaseE_val: 9.00E-59ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0010598GO-cc Annotation by Michelle Graham. GO Cellular Compartment: NAD(P)H dehydrogenase complex (plastoquinone) SoyBaseN/AISS
GO:0042651GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane SoyBaseN/AISS
GO:0016655GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor SoyBaseN/AISS
PF10716PFAM NADH dehydrogenase transmembrane subunit JGI ISS
UniRef100_C6T2V2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2V2_SOYBN SoyBaseE_val: 2.00E-140ISS
UniRef100_F8SVT7UniRef Annotation by Michelle Graham. Most informative UniRef hit: NADH dehydrogenase subunit NdhL n=1 Tax=Wolffia australiana RepID=F8SVT7_9ARAE SoyBaseE_val: 1.00E-38ISS

Expression Patterns of Glyma05g27081
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g27081 not represented in the dataset
Glyma05g27081 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27081
ParalogEvidenceComments
Glyma08g10061 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27081 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g139800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g27081
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g27081
>Glyma05g27081.1   sequence type=CDS   gene model=Glyma05g27081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTCACATTCAACCTCCATGTTCCCAAAGCTCTGCCTCCTCTTCCCTCTTCATCACGTGGAACAACTTCTCTCTTCTTTTCTTCCAAGCACAAATCATACCACAACAACACTAGTCCTAGCCAATCACTACGTATAACATGCAGCAGCCAGAAATCAAATCATGATGATGATGGCAGCCTAAAGTATACAAGTTTGGCACTGCAAATAGGAGTACTCTTGGCCTTGGCTGAGCAGCCAGTATTGGCTGTGACTGGAGAGAATAACCGGCCAGAACTCCTCTGGGTTTTGACACAATGGGGGGTTGTTCTCTTTGGATATTTCCTTGTCGTGCCACCAATAATCATGTACTGGCTTTGGAAAAGATGGTACAGAAGAAACTTGCTGGAGATGTATTTACAATTCATGTGTGTCTTCATTTTCTTCCCAGGGGTTATTCTTTGGGCACCATTTTTAAACTTCAGGAAATTCCCACGGGACCCTTCCTTGCAGTACCCTTGGTCTGTACCTGAAGATCCTTCAAAAATTAGAAGTTCATACGCAAAGTACCCATATGCCGAACCTGAAGATTATGATAATCTATGA
Predicted protein sequences of Glyma05g27081
>Glyma05g27081.1   sequence type=predicted peptide   gene model=Glyma05g27081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFTFNLHVPKALPPLPSSSRGTTSLFFSSKHKSYHNNTSPSQSLRITCSSQKSNHDDDGSLKYTSLALQIGVLLALAEQPVLAVTGENNRPELLWVLTQWGVVLFGYFLVVPPIIMYWLWKRWYRRNLLEMYLQFMCVFIFFPGVILWAPFLNFRKFPRDPSLQYPWSVPEDPSKIRSSYAKYPYAEPEDYDNL*






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