Glyma05g27060 - SoyBase

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Report for Sequence Feature Glyma05g27060

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32946854
stop:	32951349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70750	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF593 \| chr1:26680728-26683147 REVERSE LENGTH=749	SoyBase	E_val: 7.00E-106	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04576	PFAM	Protein of unknown function, DUF593	JGI		ISS
UniRef100_Q9CAC4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IFA-binding protein n=1 Tax=Arabidopsis thaliana RepID=Q9CAC4_ARATH	SoyBase	E_val: 3.00E-103	ISS
UniRef100_UPI0002339C75	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C75 related cluster n=1 Tax=unknown RepID=UPI0002339C75	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27060

Paralog	Evidence	Comments
Glyma08g10040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g139600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g27060

Limit To All Plant Sequences

>Glyma05g27060.2   sequence type=CDS   gene model=Glyma05g27060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCAATAAGTTTGCAACCATGTTACAGCGAAACACCAACAAAATCACCCTTGTTCTAGTCTATGCCATCCTAGAATGGATTCTGATCATCCTCCTCCTCCTCAATTCTCTGTTTTCTTATCTAATCATTAAGTTTGCCGATTACTTTGGCCTCAAAAGGCCTTGCATATGGTGCACCAGAATCGATCACATCCTAGAGCCTGGGAAGTACAAGAGTTCTTGCAAAGATCTTGTGTGTGAAGCTCATGCCTCTGAGATTTCCAAACTGGGGTTCTGCTCTAATCATCACAAACTGGCTGAGTCACAAGACATGTGTGAGGATTGCTCATCCTCGTCCCAACCAGATTATGTGAAACTCTCACAGAGTTTTGGTTTCTTTCCATGGATGAAACAGATAGGTATGATTCAGGATGAGGGTGCTGAAGATGCTGTTGACAAGGCAATTGTGAAGGTTGAAGAGGCTTTGAGGTGTTCTTGCTGTGGTGTCAACTTGGACAACAGATTCTACCCTCCTTGCATTCTGATCAAGCCTTCTCTCAATGTTTTGGAGTATGACCAGAAGCAGAATTCGGAGCGCCGGGTTGGTGTAGAGATTGATGAAGATCACACCAGATCGGATATTGTGCTTGATCATCATCAGGAGGAAAAGGAGAATGAAGAAAACAAGGGAAGCCACATGGTGTTTGAGGTTGATCGGGGTTTGGATAGAAAAGATGAGGAGGTAGAGAAGAGTTGTGATTGTTCTGTGTGTGATGGCGTGGAGATTCTGTGTGATGAAATTTGCAATTTGGATTTGGGTGTGGAGAAAGGGAAAGAAACAATTGAAGAGGAAAGTTTGAATGTCCCTAAGCCTAAGGATAATGATGGTGATGATGTTGTTGCTGCTGCTGATGATGAAGATCAAGCTTGTGAGAAATCCACTGCTCAAGTTGATTGCACTAGAGAGATAACTGTGGAGACTCCATCCATACATCTGGAATTTTTCATTCATGGTGATGATTGCAGATTGATTCCTATTGAATTGGTTGACTCCCCTGCCCTAGAAAACAGGAAACAAAGCAAATATAAGGTGGGAGGTGAAGGGATCAACAGCAATGAAGATTTTATTCTGGACTTTGATAAGAGTGCTGATGCAGAAGCCGAACCGGTTGTGGAGAATTGGCACATTTCTGGGGATATTGTGGCAGAATTTTCAGCACAAGGGAATGAAAATGTTTCTAAGTCCAATGGGGGTGAATCAGTTCAATTAAGGACCAGAGGCCAGTCCTCAGAACTGTTACAAGTAGAAGAAGAAAATTTGGAGCAGAATTGTGAAGATGTGAGATTTGTTCAAACCTCGGATGACTTGACCAAGGATGATAATGTTGAAGTAAACATGGAAAGAAGAGATGCAGAACTATGTTCAGATGTTTCTCTAGCATCTGAAGATGCATCACAAATGGAAGGTGAGGAATATGAAGCAGAAGTCTCAATAGGGACTGAAATTCCTGATCAGGAGCAAGTGGATGAGTATCAAAGCCAAGATGTTCTTTTGGATACAAATCAACAAATGCAAGAAGATCCATCTACTAGCACAGTCAGATTTAATGTGCAAGATGAAATTGGTCATGACAAAGGTGAAGAGTTTGTAGAATTTAAAACCATGTCACTTGAAGTGAAAATGCCAACAGTAAATAACCATTTGCCATCTTTATTGGAGCTTAATGAGAATGAGGAAGAAAAAGTTCCTGAGACACCCACTTCTTTGGAGAGTCTACATCAGCTACACAAGAAACTACTTCTCCTTGAGAGGAAAGAATCAGGAACAGAAGAGTCATTGGATGGAAGTGTGATAAGTGATATAGAAGGTGGTGAGGTAACCATTGAAAAGTTAAAATCTGCATTGAAATCTGAAAGGAAAGCCTTAAGTACTCTATATGCAGAACTAGAAGAAGAGAGAAGTGCATCTGCTATAGCAGCCAATCAAACAATGGCAATGATAAATAGGCTTCAAGAAGAGAAAGCAGCAATGCAGATGGAAGCCTTGCAGTATCAAAGAATGATGGAAGAACAATCTGAGTATGATCAGGAGGCTTTGCAACTCTTGAATGAGCTCATGATGAAGAGGGAGAAAGAGAAGCTAGAGCTAGAAAAGGAGATTGAAGTATATAGAAAGAAGGTTCATGAATATGAGGTAAGAGAAAAGATGATGATGTCAAGAAGAGATGGTAGCATGAGAAGCAGAACTTCATCTCCCTCTTGTAGCAATGCTGAAGATAGTGATGGATTGTCCATTGACTTGAATCACGAAGCAAAGGAGGAAAATGGGTTTTGTAGTCATCAAGATCAAGAATGCAGCAACCAGAACACCCCCGTGGACGCGGTCTTATATTTGGAGGAATCATTGGCAAACTTCGAGGAAGAGAGGTTACAAATTCTAGAACAGCTCAAGGTATTGGAAGAAAAGCTAGTTATATTGAATTACGAGGAAGATCACTGCTCCGATGATGCTAAATCAGTAGAACATCTTTGTGAAGAGAATGGGAATGGATACCATCATGATCATGATGATCACAATGGTCAGGTAAATGGATTTGCAAATGGTCATGTAAAGGAAATAAATGGAAAGCATCAAGGGAGGAAAATCATGGGTGCAAAAGGCAAAAGGCTCCTCCCACTTTTTGATGCAATGAGTTCAGAAGCAGATGTAGAGTTGAGTGGAGACGAGTTAGACTTTCCCCACTTGCAAAACAATTCAGTTGAAAAGGTTAATTCGGATAAGAAAAAGCTTGCTTTAGAGGATGAGGTGGATAATGTTTACGAGAGACTACAGGTGCTGGAGGCAGATAGAGAGTTTCTAAAGCATTGTATCAGCTCTCTGAGAAAAGGAGATAAAGGGTTACATCTTCTACAAGAAATTTTACAACATCTTCGTGATTTGAGGAATGTGGAACTCCGGCTCAGGAACATGGGAGATCTTGCAGTGTAA

Predicted protein sequences of Glyma05g27060

Limit To All Plant Sequences

>Glyma05g27060.2   sequence type=predicted peptide   gene model=Glyma05g27060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAANKFATMLQRNTNKITLVLVYAILEWILIILLLLNSLFSYLIIKFADYFGLKRPCIWCTRIDHILEPGKYKSSCKDLVCEAHASEISKLGFCSNHHKLAESQDMCEDCSSSSQPDYVKLSQSFGFFPWMKQIGMIQDEGAEDAVDKAIVKVEEALRCSCCGVNLDNRFYPPCILIKPSLNVLEYDQKQNSERRVGVEIDEDHTRSDIVLDHHQEEKENEENKGSHMVFEVDRGLDRKDEEVEKSCDCSVCDGVEILCDEICNLDLGVEKGKETIEEESLNVPKPKDNDGDDVVAAADDEDQACEKSTAQVDCTREITVETPSIHLEFFIHGDDCRLIPIELVDSPALENRKQSKYKVGGEGINSNEDFILDFDKSADAEAEPVVENWHISGDIVAEFSAQGNENVSKSNGGESVQLRTRGQSSELLQVEEENLEQNCEDVRFVQTSDDLTKDDNVEVNMERRDAELCSDVSLASEDASQMEGEEYEAEVSIGTEIPDQEQVDEYQSQDVLLDTNQQMQEDPSTSTVRFNVQDEIGHDKGEEFVEFKTMSLEVKMPTVNNHLPSLLELNENEEEKVPETPTSLESLHQLHKKLLLLERKESGTEESLDGSVISDIEGGEVTIEKLKSALKSERKALSTLYAELEEERSASAIAANQTMAMINRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNELMMKREKEKLELEKEIEVYRKKVHEYEVREKMMMSRRDGSMRSRTSSPSCSNAEDSDGLSIDLNHEAKEENGFCSHQDQECSNQNTPVDAVLYLEESLANFEEERLQILEQLKVLEEKLVILNYEEDHCSDDAKSVEHLCEENGNGYHHDHDDHNGQVNGFANGHVKEINGKHQGRKIMGAKGKRLLPLFDAMSSEADVELSGDELDFPHLQNNSVEKVNSDKKKLALEDEVDNVYERLQVLEADREFLKHCISSLRKGDKGLHLLQEILQHLRDLRNVELRLRNMGDLAV*

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