Glyma05g27050 - SoyBase

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Report for Sequence Feature Glyma05g27050

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32928684
stop:	32933180
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70740	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:26673847-26675687 REVERSE LENGTH=425	SoyBase	E_val: 6.00E-178	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF787	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9SP66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9SP66_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K3D7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3D7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27050

Paralog	Evidence	Comments
Glyma08g10030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g139500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g27050

Limit To All Plant Sequences

>Glyma05g27050.2   sequence type=transcript   gene model=Glyma05g27050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTGTTCTCTCCGAAGCAACGAAAACTCTATTTTGTTCTCTTACTCGCGCACCTCTCATTTTCCCACGACCCATTTTCATTTTTCCAAAAAGATCTCAACTTTGCTTCAAACTAGAACACTCCCTCTTTTTACGTTCCCGTTTCATGGGCATCTCTTGGAATCGGGAACCATAGACATCGCCATGGAAAAGGACAAGTCTCACACTCACAGCTTTCTTCACAGTATCGTCAAACACTTCAAATTCGGTTCACCGAAAGGATTCTGTTTCTGCTCTGTTGTGTTTGATCAGAGCGAAACAATGAAGCTGACGTACACCAAATGGCTGCACAGGAGCAGAAGATCTTTGCCTACGAAACCTTGACAGCTGCAACTAAGAATTTTAGTGCTATTCATAAGCTTGGTGAGGGAGGTTTTGGACCAGTCTACAAGGGGAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACACACGTCAAACCAAGGGAAGAAGGAGTTCATGAATGAGGCCAAGTTGTTGGCACGTGTGCAGCATCGGAATGTGGTCAATTTGGTGGGCTATTGTGTCTATGGCACCGAGAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGCCTAGACAAACTTCTATTCAAATCAGAAAAGAGAGAGGAGCTTGATTGGAAACGTAGGGTTGGAATAATCACAGGCGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTCGCACAATTGCATCATCCATCGCGATATAAAGGCGAGTAACATCTTGCTTGATGAGAAATGGACGCCCAAGATTGCAGATTTTGGCATGGCTCGGCTCTTCCCGGAAGATCAAACCCAGGTCAATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCGGAATACGTGATGCATGGAAATCTATCGGTGAAGGCAGATGTATTTAGCTATGGAGTTTTGGTATTGGAGTTGATCACCGGCCAACGAAACTCATCTTTTAATTTGGACGTGGACGCGCAGAATCTGCTAGATTGGGCATACAAGATGTTCAAGAAAGGGAAGAGCCTAGAACTTGTGGATTCTGCATTAGCATCTAGGATGGTAGCTGAAGAAGTAGCAATGTGCGTTCGGCTGGGTTTGTTATGCACTCAAGGCGATCCTCAGCTACGCCCCACGATGAGGCGCGTGGTGGCGATGCTGTCGAGGAAGCAAGGGAACATGCAAGAACCTACGAGACCAGGAATACCAGGTTCAAGATACAGAAGACCACCTAGGAGACACTCCGCATTGTCTTCCACATTGGGTACCTCTGGTTCTGATTCTAGTAATAATGATAATACCACGGTTACTACTAGTGCCACAGGGACTAGCTCAGCTACTGCAGAAACAGACCCCAAAGGGAAACGTCCAATGCGGGAGGCTTAGTTAGCTTAGTCTAAGTCAATGTAAATACTCAATTCTTATTCTTTAATTATTATGTAATCTCTCATCACATGCTGCTGCTGTAATCAGGGAAAAGGGTGTACAGTATACATATTTTTACGGTTTCTTTCAAATCCTTTTCTATTTTGGATTTGAACCATTTTGCTGTAAATCAAAGAGGTCTCAAATCAATTGTTTCATACAGAATGGCACTAGTAGTGTAAATTTGCTTCAAAGCTTTCATTCGCTTGATGGCCTTTATATCTCAAAAGTCGATTGTTA

Coding sequences of Glyma05g27050

Limit To All Plant Sequences

>Glyma05g27050.1   sequence type=CDS   gene model=Glyma05g27050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGACAAGTCTCACACTCACAGCTTTCTTCACAGTATCGTCAAACACTTCAAATTCGGTTCACCGAAAGAGCGAAACAATGAAGCTGACGTACACCAAATGGCTGCACAGGAGCAGAAGATCTTTGCCTACGAAACCTTGACAGCTGCAACTAAGAATTTTAGTGCTATTCATAAGCTTGGTGAGGGAGGTTTTGGACCAGTCTACAAGGGGAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACACACGTCAAACCAAGGGAAGAAGGAGTTCATGAATGAGGCCAAGTTGTTGGCACGTGTGCAGCATCGGAATGTGGTCAATTTGGTGGGCTATTGTGTCTATGGCACCGAGAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGCCTAGACAAACTTCTATTCAAATCAGAAAAGAGAGAGGAGCTTGATTGGAAACGTAGGGTTGGAATAATCACAGGCGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTCGCACAATTGCATCATCCATCGCGATATAAAGGCGAGTAACATCTTGCTTGATGAGAAATGGACGCCCAAGATTGCAGATTTTGGCATGGCTCGGCTCTTCCCGGAAGATCAAACCCAGGTCAATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCGGAATACGTGATGCATGGAAATCTATCGGTGAAGGCAGATGTATTTAGCTATGGAGTTTTGGTATTGGAGTTGATCACCGGCCAACGAAACTCATCTTTTAATTTGGACGTGGACGCGCAGAATCTGCTAGATTGGGCATACAAGATGTTCAAGAAAGGGAAGAGCCTAGAACTTGTGGATTCTGCATTAGCATCTAGGATGGTAGCTGAAGAAGTAGCAATGTGCGTTCGGCTGGGTTTGTTATGCACTCAAGGCGATCCTCAGCTACGCCCCACGATGAGGCGCGTGGTGGCGATGCTGTCGAGGAAGCAAGGGAACATGCAAGAACCTACGAGACCAGGAATACCAGGTTCAAGATACAGAAGACCACCTAGGAGACACTCCGCATTGTCTTCCACATTGGGTACCTCTGGTTCTGATTCTAGTAATAATGATAATACCACGGTTACTACTAGTGCCACAGGGACTAGCTCAGCTACTGCAGAAACAGACCCCAAAGGGAAACGTCCAATGCGGGAGGCTTAG

>Glyma05g27050.2   sequence type=CDS   gene model=Glyma05g27050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCACAGGAGCAGAAGATCTTTGCCTACGAAACCTTGACAGCTGCAACTAAGAATTTTAGTGCTATTCATAAGCTTGGTGAGGGAGGTTTTGGACCAGTCTACAAGGGGAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACACACGTCAAACCAAGGGAAGAAGGAGTTCATGAATGAGGCCAAGTTGTTGGCACGTGTGCAGCATCGGAATGTGGTCAATTTGGTGGGCTATTGTGTCTATGGCACCGAGAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGCCTAGACAAACTTCTATTCAAATCAGAAAAGAGAGAGGAGCTTGATTGGAAACGTAGGGTTGGAATAATCACAGGCGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTCGCACAATTGCATCATCCATCGCGATATAAAGGCGAGTAACATCTTGCTTGATGAGAAATGGACGCCCAAGATTGCAGATTTTGGCATGGCTCGGCTCTTCCCGGAAGATCAAACCCAGGTCAATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCGGAATACGTGATGCATGGAAATCTATCGGTGAAGGCAGATGTATTTAGCTATGGAGTTTTGGTATTGGAGTTGATCACCGGCCAACGAAACTCATCTTTTAATTTGGACGTGGACGCGCAGAATCTGCTAGATTGGGCATACAAGATGTTCAAGAAAGGGAAGAGCCTAGAACTTGTGGATTCTGCATTAGCATCTAGGATGGTAGCTGAAGAAGTAGCAATGTGCGTTCGGCTGGGTTTGTTATGCACTCAAGGCGATCCTCAGCTACGCCCCACGATGAGGCGCGTGGTGGCGATGCTGTCGAGGAAGCAAGGGAACATGCAAGAACCTACGAGACCAGGAATACCAGGTTCAAGATACAGAAGACCACCTAGGAGACACTCCGCATTGTCTTCCACATTGGGTACCTCTGGTTCTGATTCTAGTAATAATGATAATACCACGGTTACTACTAGTGCCACAGGGACTAGCTCAGCTACTGCAGAAACAGACCCCAAAGGGAAACGTCCAATGCGGGAGGCTTAG

Predicted protein sequences of Glyma05g27050

Limit To All Plant Sequences

>Glyma05g27050.1   sequence type=predicted peptide   gene model=Glyma05g27050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKDKSHTHSFLHSIVKHFKFGSPKERNNEADVHQMAAQEQKIFAYETLTAATKNFSAIHKLGEGGFGPVYKGKLNDGREIAVKKLSHTSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVYGTEKLLVYEYVAHESLDKLLFKSEKREELDWKRRVGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDEKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQNLLDWAYKMFKKGKSLELVDSALASRMVAEEVAMCVRLGLLCTQGDPQLRPTMRRVVAMLSRKQGNMQEPTRPGIPGSRYRRPPRRHSALSSTLGTSGSDSSNNDNTTVTTSATGTSSATAETDPKGKRPMREA*

>Glyma05g27050.2   sequence type=predicted peptide   gene model=Glyma05g27050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAQEQKIFAYETLTAATKNFSAIHKLGEGGFGPVYKGKLNDGREIAVKKLSHTSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVYGTEKLLVYEYVAHESLDKLLFKSEKREELDWKRRVGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDEKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQNLLDWAYKMFKKGKSLELVDSALASRMVAEEVAMCVRLGLLCTQGDPQLRPTMRRVVAMLSRKQGNMQEPTRPGIPGSRYRRPPRRHSALSSTLGTSGSDSSNNDNTTVTTSATGTSSATAETDPKGKRPMREA*

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