Glyma05g27040 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g27040

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32925730
stop:	32928552
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18240	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S24/S35, mitochondrial \| chr3:6255810-6257695 FORWARD LENGTH=419	SoyBase	E_val: 4.00E-177	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13490	Panther	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28	JGI		ISS
PF10213	PFAM	Mitochondrial ribosomal subunit protein	JGI		ISS
UniRef100_I1K3D6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3D6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LJQ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3G18240 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LJQ6_ARATH	SoyBase	E_val: 2.00E-174	ISS

Expression Patterns of Glyma05g27040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27040

Paralog	Evidence	Comments
Glyma08g10020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g139400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g27040

Limit To All Plant Sequences

>Glyma05g27040.1   sequence type=CDS   gene model=Glyma05g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGAACTCTTCTGAGAAATGCTACTCTCTACACTCGCAACCTTCTCCATCAGTCGGCCCCTGCATTCGACGCTTCAACTCGTCCCCAACTCAGACTCTTCTGCTCCAATGAAACCCCCCCACCGGTTCCCCAAATCGACGACGTTGACAACAAAGAGCTGAAAGCGCAGATCGAGAGCTACTTCAAGGGCGACGAGCAGGTGCTTCCGTCGATCATGGAGACGATTCTGAAGCGGAAGCTGTCGGGAAAGCACGAGGACACCGACGACGAGCTCATGGAGGAGCTCCGCATGCGCCCCCTGGACGACGTTGACGACCGGGACTTCGAGTCTGACTTCGAGAACATTCACGATACCGACGAGGAGATCGACGATTTGTACAACGCCAGGGACGTGGTGATGAAGAGGATGGTGAAGGACGAGTACTTCAACATGGATGATAAAAAGTGGGATGACATTGTTGAGGACGGGATCAAGCACGGGCTTCTTAGGGACACCAAGGAGTGCGAGGAGATTCTCGAGGATATGCTCAGCTGGGACAAACTCCTACCTGATGAGATAAAACAGAAGGTGGAAGTAAAATTTAATGAGCTAGGGGACATGTGTGAAAAAGGTGAACTTGAACCTGAAGAAGCTTATGAACAGTTTAAGAAGTTTGAGGATGAGATTGTGGCAGAATACCTGGACAAAATGGAAAAGGAGGAGGCTCCACAGTTTGATGATACTACTGTGCCGGATAAGAAAAAGGACTTGGATGATCCACCGGGTGAAGGTCCAATTCTGCGCTGGCAAACCCGGGTAGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAGAACAGGAAAGTAAAATTGTCTGTTACTGTGAAGGAGCTAGGGCTTTCAAAATACCAATTTCGCCGTCTCAGGGAATTGGTTGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGAGAAGAAAACAGAAAGGACTGCTTAAGGACCCTTCTCCATCTCATTGAGGAGGCAGGGAAAGCTAATAAACTAGTAGATGATGCTCGATCCTCATACGTAAAAGAGAGGCTTCGTGCCAATCCAGCTTTCATGGAGAGGCTGCATGCCAAGTCAATGAGGTTGCGAGAATCTAATCAGGTTCCTGCTTGA

Predicted protein sequences of Glyma05g27040

Limit To All Plant Sequences

>Glyma05g27040.1   sequence type=predicted peptide   gene model=Glyma05g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRTLLRNATLYTRNLLHQSAPAFDASTRPQLRLFCSNETPPPVPQIDDVDNKELKAQIESYFKGDEQVLPSIMETILKRKLSGKHEDTDDELMEELRMRPLDDVDDRDFESDFENIHDTDEEIDDLYNARDVVMKRMVKDEYFNMDDKKWDDIVEDGIKHGLLRDTKECEEILEDMLSWDKLLPDEIKQKVEVKFNELGDMCEKGELEPEEAYEQFKKFEDEIVAEYLDKMEKEEAPQFDDTTVPDKKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLLHLIEEAGKANKLVDDARSSYVKERLRANPAFMERLHAKSMRLRESNQVPA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain