Glyma05g27030 - SoyBase

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Report for Sequence Feature Glyma05g27030

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32914628
stop:	32919134
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18270	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene \| chr3:6262010-6264025 FORWARD LENGTH=410	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
PTHR13794	Panther	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	JGI		ISS
PTHR13794:SF13	Panther	MANDELATE RACEMASE	JGI		ISS
PF01188	PFAM	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	JGI		ISS
PF02746	PFAM	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	JGI		ISS
UniRef100_B9SFX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Muconate cycloisomerase, putative n=1 Tax=Ricinus communis RepID=B9SFX6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K3D5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K3D5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27030

Paralog	Evidence	Comments
Glyma08g10010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g139300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g27030

Limit To All Plant Sequences

>Glyma05g27030.1   sequence type=CDS   gene model=Glyma05g27030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCCAGTCTTAGGATCCAACATGTCTCAAACACTAAGCTGCAGAAGACTACACCCAATGGACTCAACTTTGATGAAGTCAATGTCCCACAATCCAAAAAAGTCCTATTCTACCGCATTCACAAGGCACTTTGCCAAAAAATCTGGTTTTTTGATCAAGATCATGGCTTCTGCTACACCTACAGCAGCTGCTATCACCTTTGGATTCAAGAATTTGTTGGAAACATTCACTGTTGATGTGCATAGAGCAGAGAACAGGCCACTGAATGTGCCCCTAATAGCACCTTTTACCATTGCTACCTCTAGATTGGACAAGGTGGAGAACGTGGCCATAAGGGTTGAGTTGAGCAACGGTGCGGTGGGGTGGGGTGAGGCACCAATTTTGCCTTTTGTTACTGCAGAGGACCAAACCACTGCCATGGTCAAGGCTTCTGAGGCATGTGCCTTCTTGAGGAAATGTCCAGCACTCACTTTGGGTTCCATGTTGGGGGAGATTGCTGGTATTCTTCCAGGGCATCAATTTGCTTCAGCTAGGGCCGGGATTGAGATGGCAATAATTGATGCTGTTGCAAATAGTATTCGTGTGCCACTGTGGAGGCTTTTTGGTGGGGCTTCAAATACCATAACCACTGATATTACAATCCCAATTGTTTCTCCAGCTGAAGCAGCTGAATTGGCTTCTAAGTACTATAAAGAAGGATTTAAGACTTTAAAGCTGAAAGTGGGCAAGAATCTGAATGCAGATATAGAAGTGCTTCAAGCTATACGTGTTGCACACCCTAAGTGTCAGTTTATTCTTGATGCTAATGAGGGGTATAACTCTGAGGAAGCAGTGGATGTTCTTGAGAAACTACATGATATGGGGTTGACTCCTGTTCTATTTGAGCAACCAGTTCATAGAGATGATTGGGATGGTCTTCGGTATGTCGGTAATATAGCAAGAGAGAGATATGGAGTATCTGTTGCAGCTGATGAGAGTTGCAGAAGTATAATTGATGTTTACAAAATTGTGGAAGGGAATGTTTTAGATGTCATTAACATTAAGCTTGCCAAAGTTGGGGTTATGGGTGCCCTTGAAATTATTGAAAAGGCAAAAGCAGCAGGATTAGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCTATGGGTTTTGCTGGCCAACTTGCTGCTGGCCTTGGCTGTTTTAAGTTCATTGACTTAGACACACCACTTCTGCTGTCAGATGATCCAGTTCTTGAAGGCTATGAAGTTTCAGGTGCCACTTATAAGTTCACAAACGCTAGGGGACATGGTGGATTTCTTCACTGGGACAACCTTGCTTAA

Predicted protein sequences of Glyma05g27030

Limit To All Plant Sequences

>Glyma05g27030.1   sequence type=predicted peptide   gene model=Glyma05g27030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPVLGSNMSQTLSCRRLHPMDSTLMKSMSHNPKKSYSTAFTRHFAKKSGFLIKIMASATPTAAAITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRVELSNGAVGWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQFASARAGIEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEGFKTLKLKVGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVLEGYEVSGATYKFTNARGHGGFLHWDNLA*

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