Glyma05g27020 - SoyBase

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Report for Sequence Feature Glyma05g27020

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32905476
stop:	32913745
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g27020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15030	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF789) \| chr1:5177895-5179853 FORWARD LENGTH=360	SoyBase	E_val: 4.00E-101	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05623	PFAM	Protein of unknown function (DUF789)	JGI		ISS
UniRef100_Q7Y149	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y149_ORYSJ	SoyBase	E_val: 3.00E-92	ISS
UniRef100_UPI00023393E3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023393E3 related cluster n=1 Tax=unknown RepID=UPI00023393E3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g27020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g27020

Paralog	Evidence	Comments
Glyma08g10001	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g27020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g139200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g27020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g27020

Limit To All Plant Sequences

>Glyma05g27020.2   sequence type=CDS   gene model=Glyma05g27020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGGAACTGCACTGCAATTCGGCGGCGTTCGCGGCGATGATCGGTTTTACATTCCGGTGAAGACGCGGAAGAGCCAGAATCAGCGCAAACAGAGTCACAGAGCCAAGAACAATGAACCTGAAAACACGGATTTAGTTTCGAAGAGCAAAATCGATATCTCTGAGGATAACAACAGCAATAGCGATAGCAATCTCAACCAATCTCTGAAACCAACTCTTTCTCCGTCCGTAGAGTCTGTCAGTAACATCGATAGGTTCTTGGAGTCCACAACACCGTCAGTTCCGGCTCAGTATTTCTCCAAGACAACGATGAGAGGATGGAAGTTTTGCGATGTGGAGTATCAGTCTTATTTTGCACTGAGTGATCTGTGGGAGTCTTTTAAGGAGTGGAGTGCGTACGGAGCTGGAGTGCCTTTGGTGCTTGATCAAAGTGATTCTGTTGTTCAGTATTATGTTCCGTATTTGTCGGCTATTCAACTCTATGCTCACTCTGCTGAGAAGGCAACTGCAAAGCCAAGGTACACCGGTGAAGATAGTGATGGTGATTACTACAGAGATTCATGCAGTGAAGGAAGTAGTGATTATGAATATGGAAAAAGGACTGAATTTATGACTCAAAGAAGTAGTCAGTATCTAACAGGTGGTATCTCACTGCAAATGAACACACTATCTATGCATGATAAACACAGTACTGTGCAAGAAGGATTTTCTAGTGATGATAGTGAAACTGGGAATCCTCAAGATCTACTTTTTGAGTATTTTGAACAAGATCCTCCGTATAGTCGTGAGCCCTTGGCTGACAAGATTCAAGATCTTGCACGCCACTATCCTGCCCTCAAGTCGTTGAGAAGCTGTGATTTATTACCAGTCAGTTGGGTGTTTTGGGCCAGGTATCCTATATATCGAATACCCACAGGTCCAACTTTAAAAGATTTAGATGGATGCTTTCTAACATACCATACACTCCATACACCCTTGACAGGAAGTGGTCGTACTCATGCTCCAACACTGGTTTATCCCAGTGAGATGGATGGTGTACCAAAGATTTCTATACCTACTTTTGCAATGGCTTCCTATAAGTTAAAGGGGTCTATTTGGATGAAAAAAGGAGTTAGTGAATCTCAACAAGTGAGTTCCCTCTTGCAGGCTGCTGATAACTGGTTAAGACTAGTTCAGGTTAATCACCCGGATTTTCAGTTCTTTAAATCACATGGCACATACCATAGATGA

Predicted protein sequences of Glyma05g27020

Limit To All Plant Sequences

>Glyma05g27020.2   sequence type=predicted peptide   gene model=Glyma05g27020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGTALQFGGVRGDDRFYIPVKTRKSQNQRKQSHRAKNNEPENTDLVSKSKIDISEDNNSNSDSNLNQSLKPTLSPSVESVSNIDRFLESTTPSVPAQYFSKTTMRGWKFCDVEYQSYFALSDLWESFKEWSAYGAGVPLVLDQSDSVVQYYVPYLSAIQLYAHSAEKATAKPRYTGEDSDGDYYRDSCSEGSSDYEYGKRTEFMTQRSSQYLTGGISLQMNTLSMHDKHSTVQEGFSSDDSETGNPQDLLFEYFEQDPPYSREPLADKIQDLARHYPALKSLRSCDLLPVSWVFWARYPIYRIPTGPTLKDLDGCFLTYHTLHTPLTGSGRTHAPTLVYPSEMDGVPKISIPTFAMASYKLKGSIWMKKGVSESQQVSSLLQAADNWLRLVQVNHPDFQFFKSHGTYHR*

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