Glyma05g26990 - SoyBase

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Report for Sequence Feature Glyma05g26990

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32877750
stop:	32883260
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66140	AT	Annotation by Michelle Graham. TAIR10: zinc finger protein 4 \| chr1:24620063-24620845 REVERSE LENGTH=260	SoyBase	E_val: 2.00E-34	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10042	Panther	EARLY GROWTH RESPONSE PROTEIN	JGI		ISS
PTHR10042:SF14	Panther	ZFP4 (ZINC FINGER PROTEIN 4), NUCLEIC ACID BINDING	JGI		ISS
UniRef100_D9ZIT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2H2L domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIT1_MALDO	SoyBase	E_val: 2.00E-79	ISS
UniRef100_I1K3D2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3D2_SOYBN	SoyBase	E_val: 2.00E-180	ISS

Expression Patterns of Glyma05g26990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26990

Paralog	Evidence	Comments
Glyma08g09970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g139000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26990

Limit To All Plant Sequences

>Glyma05g26990.2   sequence type=transcript   gene model=Glyma05g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTTATTAGTTGTTTCACGTTTTGTGTAGCAGCATGCGTCTTCTGCTCGAGTACCTTAGCTGGTGGGTCTTGGCAGGTATGATGTTTGGTTTGGTCTTTTTTAACAACATCTTCTCACAGTCACAGAGACAGAGAGACAGACACAACAGACACGTTCACACTAATAACATAACTGATAATTAGCCCCTTATCAGTTAAAGCTAAATAGAACCTCAAAATCGACAAAAGACGTGGTTCATGTCTTCATGTTATCTGACTTTTTTCCATCTCTCTCTCTCTCTTCCATGCTTCTTTCCCATTACATAACTCTTTCTCTCTCTCTGTGATCTTATCTCCTTTTAATTATTCACTCACCCCTTTACACTGGTTGATGCAAAAAAACATGGTACCCTCTATTGTTGGTTGTTGCTGACACTCTTCATAGTCGCAAAGTAGGTGACTAGCAGTAGCATGTAATGGTATCATGGTAAGCTGACCAAAGTGACGGATTTGTTCCATCACTGCCTTCAGGGAAAGAAGTTAACTCATAGCAGGTCCATACAAACATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCAAATGTATCCTTTCATGAAGCATCTCATGATCTTAAAAAGGGCAGCACCACCACTTCCTCCTGTCTCACAAAGGATGAAACTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTTAATTCCGGTGATGGCGAGTTGAAAGGCTCAAGTGATGCTAGCAGTGAAGTTGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCAAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGTGGTCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTCAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACACGTGCCGTCCTCCGCGGCAGCACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTGGTTTTCGTGGAAGATGATGATGTTGGATTCTTTTCGCCTGGCAGTTTCAGACAGGTAGACCAACAAGGAGCTGGTGTTAATGTAGGACATGCTCAAAGTTCAAATGCTAGTTTAATTCCAATGGTGCCTCCTCCACCACAAGCTCTACATCTCCTGATCTCACATTGAAGCTTTAAGTTAAGGCTTAAGAATGATGATACATACACAAGCAAAGGCCTCACAAAGTAATAAATAAGTGGCTAAGAACTGACTCATCCATTGCTTTGCATTCAGCCAAAATTTTCTCAACCACTCATTTTCATTGTGAGGGATTTAATTATCAGAGTTTTTATGTGTGTATGTATCACTTCTCTTGAGATTTTTTAGTCTTTGATTTCATTCTCTTCAGACATGAAATTATTAATTAATAGGGCGTGCATTGTACAGTGAGATGTGTATTTCCAATGGCGATTTTAGCTTATTTTAATCTCACATGTTATTAATGGTTTCCTCTCATATGTATTTTACTTCGTTATTCATGAACCATGATACAGCGTTCAGGATAATGGACTAATGTTTTATATCTAAAAAAATGTGTTTGTGATGCACTGTTTGACGGAAACATGAGGTATGAATGTGATTCAATTAGCAATAATTGGTGGATTTTTC

Coding sequences of Glyma05g26990

Limit To All Plant Sequences

>Glyma05g26990.1   sequence type=CDS   gene model=Glyma05g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCAAATGTATCCTTTCATGAAGCATCTCATGATCTTAAAAAGGGCAGCACCACCACTTCCTCCTGTCTCACAAAGGATGAAACTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTTAATTCCGGTGATGGCGAGTTGAAAGGCTCAAGTGATGCTAGCAGTGAAGTTGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCAAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGTGGTCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTCAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACACGTGCCGTCCTCCGCGGCAGCACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTGGTTTTCGTGGAAGATGATGATGTTGGATTCTTTTCGCCTGGCAGTTTCAGACAGGTAGACCAACAAGGAGCTGGTGTTAATGTAGGACATGCTCAAAGTTCAAATGCTAGTTTAATTCCAATGGTGCCTCCTCCACCACAAGCTCTACATCTCCTGATCTCACATTGA

>Glyma05g26990.2   sequence type=CDS   gene model=Glyma05g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCAAATGTATCCTTTCATGAAGCATCTCATGATCTTAAAAAGGGCAGCACCACCACTTCCTCCTGTCTCACAAAGGATGAAACTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTTAATTCCGGTGATGGCGAGTTGAAAGGCTCAAGTGATGCTAGCAGTGAAGTTGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCAAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGTGGTCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTCAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACACGTGCCGTCCTCCGCGGCAGCACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTGGTTTTCGTGGAAGATGATGATGTTGGATTCTTTTCGCCTGGCAGTTTCAGACAGGTAGACCAACAAGGAGCTGGTGTTAATGTAGGACATGCTCAAAGTTCAAATGCTAGTTTAATTCCAATGGTGCCTCCTCCACCACAAGCTCTACATCTCCTGATCTCACATTGA

Predicted protein sequences of Glyma05g26990

Limit To All Plant Sequences

>Glyma05g26990.1   sequence type=predicted peptide   gene model=Glyma05g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMTPNLNLEPENHSEGSSQVASNVSFHEASHDLKKGSTTTSSCLTKDETDPGSITLDLTLNFNSGDGELKGSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRHVPSSAAALRAPDMRAAAKFERNQFGSLVFVEDDDVGFFSPGSFRQVDQQGAGVNVGHAQSSNASLIPMVPPPPQALHLLISH*

>Glyma05g26990.2   sequence type=predicted peptide   gene model=Glyma05g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMTPNLNLEPENHSEGSSQVASNVSFHEASHDLKKGSTTTSSCLTKDETDPGSITLDLTLNFNSGDGELKGSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRHVPSSAAALRAPDMRAAAKFERNQFGSLVFVEDDDVGFFSPGSFRQVDQQGAGVNVGHAQSSNASLIPMVPPPPQALHLLISH*

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