Glyma05g26980 - SoyBase

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Report for Sequence Feature Glyma05g26980

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32867920
stop:	32872625
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14740	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1423) \| chr1:5075450-5077732 REVERSE LENGTH=733	SoyBase	E_val: 0	ISS
GO:0001708	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate specification	SoyBase	N/A	ISS
GO:0009880	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification	SoyBase	N/A	ISS
GO:0090421	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryonic meristem initiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR21736	Panther	VERNALIZATION-INSENSITIVE PROTEIN 3	JGI		ISS
PTHR21736:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07227	PFAM	Protein of unknown function (DUF1423)	JGI		ISS
UniRef100_G8A355	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Class I heat shock protein n=1 Tax=Medicago truncatula RepID=G8A355_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K3D1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3D1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26980

Paralog	Evidence	Comments
Glyma08g09960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g138900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26980

Limit To All Plant Sequences

>Glyma05g26980.1   sequence type=CDS   gene model=Glyma05g26980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGGAAGTAAAGATCGTGTTGTTGACTCTGAAGGTGAAAACTCCAGGAGCAAGCTCTCAAGGCACAATTTTGAGGCCAACAAGGAGTACCCAGATGAAAAAGGTGTTGAATTTCTGAGAGATTCAAAAGTGGGTGGTGGTGGTGTTGATGGGGTTTTTCACTCAAAACCCACCAAGGTTGTTGTTGTTGGTGGTGGTGGTGGCAGCAGCTCAGGGTTTCAAGAGTTGACCCTCAGCTACCTTTGTGATAACCCAAAATTCAATCTTGCTGAGAAAGAGATTCCTGGTAAAAGCCTGCTGAATTCCTTGGAAAAAATGAGCCACAAAGGGAAAGAGGTTGTGATCTGTGAGAATTCAAATCAAGATGGGAAATGGGTGGAAAGAGATTTTCTCAGCCTGAGTGAGCCAAGGGAAGATTCTTCAAAGCGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAATAGGGAGAAGAAGCCAAAACTGGAGACACTTAACCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACTGCCTCAAACGCCTTGCAAAACGGTGATCAACAACAACCAATTAGGACCAAACCTTGCAGGCCATCCACTACTACTCACACTTCATATTCCAATGACTACACTGCAGCTTCTTTGTCTTACTCTTATTCCCACCCTTTCTCTCACAATCCAAGCTGTTCACTCACCCGCAATTCAACTGATAATTTTGATTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGGACTAATGGCTCTGTGCATAGTAGGTTCAAGCCAATTGGAGATGGGTTGGTTGGTTTATCCAACCATGGTGGTGCTGCTGGTGGTATTAGTTCCTTTATGCAAGGTAATAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCTGCAAGGTCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGGGGGAGGAATTCTAAGAATCTGAGAATCTTGGAAGGCTTGGATGATGGGAAGGTAAGGAAGATTTCTAGGCCAGAGAGAATTGTTAGGGAAATTGTTTCAGAGTCTATACCTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTGAGGAATCTCATTGAGAAGCCCGAGAAGAAAGAGGAACTGGTAAGCCTCCAGAACCGGCTCGAGAGAAGATCTGACCTTACTAAGGAGAGTCTTTCAAAGTGCCATAAAGTGCAATTAGAGGTTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCCTATCTAATAAAATTCAATTGTCTGAGATGGTAGAGGTTTTCTTGTTTAAGAGGTGTAGGAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTACTTGTGGTATTCAGAAGAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCGGAAATGTTTGGTTTTGTTAAGGACGTGTTTGTGTGTTGTGCTAAGGATTGGGGTCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAAGATCTTCAGGGGAAGTGAAGATTGCAAAGGGAAGGAATTGCATGTTAAGACTGATGACATGCTATTAAAGCTTCAAACTAAAATGATATCTCCTTTGGATGCCTGCAATTACATCATGCAGTTCTTCAGCTATGCAGACAGCATGTCAGACTTTCATACTTCTGGTATTTCTTCAAAGGATTTGCCAGCCTCTCAATCTAACCTTACAAAGGATACACCATCTCTTTCAAAACCTAATTCTCTATTACCAGAATATGGTTATGACATGGGCTATTCTAGGTCACATCCTGATGCCATGTCAAGTGATCTACTTCAGAAAGACCTCAAAGCTTCCATCTTAAGTGAACTGAAAAATGAGGCTGATTTCCATTTGGGGGCTTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGCGCAGATGGAAGAAGAGTACGCCGAAAAGCTTTCCAAACTCTGCTTGCATGAGACCGAGGAAACGCAGAGGAAGAAATTGGATGAACTGAAAGTCTTGGAAAATTCCTATTTTGATTACTATAAAATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTATTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA

Predicted protein sequences of Glyma05g26980

Limit To All Plant Sequences

>Glyma05g26980.1   sequence type=predicted peptide   gene model=Glyma05g26980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIGSKDRVVDSEGENSRSKLSRHNFEANKEYPDEKGVEFLRDSKVGGGGVDGVFHSKPTKVVVVGGGGGSSSGFQELTLSYLCDNPKFNLAEKEIPGKSLLNSLEKMSHKGKEVVICENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNREKKPKLETLNLSLALPDVSLSLTASNALQNGDQQQPIRTKPCRPSTTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGLVGLSNHGGAAGGISSFMQGNNSQYKTTSSDNHSFFPSELPARSRFEAQSGDSRGRNSKNLRILEGLDDGKVRKISRPERIVREIVSESIPVMALTIQELTDDVIASTKEYLRNLIEKPEKKEELVSLQNRLERRSDLTKESLSKCHKVQLEVLVAVKMGLASFLSNKIQLSEMVEVFLFKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQKNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELDCVRKIFRGSEDCKGKELHVKTDDMLLKLQTKMISPLDACNYIMQFFSYADSMSDFHTSGISSKDLPASQSNLTKDTPSLSKPNSLLPEYGYDMGYSRSHPDAMSSDLLQKDLKASILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKLDELKVLENSYFDYYKMKKRMQDEIDGLLRRMEATKQQWV*

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