Glyma05g26950 - SoyBase

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Report for Sequence Feature Glyma05g26950

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32822324
stop:	32828723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14710	AT	Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein \| chr1:5062168-5064697 REVERSE LENGTH=601	SoyBase	E_val: 6.00E-172	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_F4HWB0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich glycoprotein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4HWB0_ARATH	SoyBase	E_val: 3.00E-169	ISS
UniRef100_UPI0002339C73	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C73 related cluster n=1 Tax=unknown RepID=UPI0002339C73	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26950

Paralog	Evidence	Comments
Glyma08g09930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g138600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26950

Limit To All Plant Sequences

>Glyma05g26950.3   sequence type=transcript   gene model=Glyma05g26950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCAAACTAACATGGCTAAATATAGAAAGGGGAATGACCAAAAGCCCCCATTTTCTTCCAGAATATTCTCTGTAAAATCCAAAATCAGCACCCACCAGTCCTCAGATGCACAGCAACAAATATATATAGAGAAAGAGTGTGTTGTGTGGTGACTTGTGAATATGAGCCACCATTTAAGACTACAACACATGCGTGATCAGTAAGCCATACCCTTTGTTCCACATTCTTCATTAATCCCAACCCTAGATCTTCCTCTTCAAGCCCCTCCCTTTGCGTCATCCCAACTCAACCACCGCTTCACCCTCATTCCATCACTCACCCTTTTCAAACCCCAGATCTCTCCAATTCTCGCTCTTATTGATTTCAACGCCATACCCATTTCATATTATCCGTTTTTCAACTCTTTTTTGGCCTTAATCACTTCTGGGGTGGCCTTGTTTCTAAACAAAATTGCTGCTTTTTGCTTTATTTGCTCTCAATTCTGCGTTTCTTTTAGTGGGGCCCTCTTGAATTGCTCTGTTTTTGTTATAAACTCGTTGTTTCTTTGCTTAGATCTAGTTGTGTTTGGGTATGCTTTATATGCGGTTGTAGTGTATTGTTGCAAGTGAGTTCTCATGGCAATGCCATCGGGAAATGTGGTAATACAGGACAAAATGCAGTTTCCAAGTGGCGGTGCCGGTGCCGGTGGTGCTGGCGGAGAGATCCACCAGCCCCACTACTGCCAGCAATGGTTTGTTGATGAGAGGGATGGGCTTATTGGCTGGCTGCGAAGCGAATTTGCAGCTGCCAATGCCATCATAGACTCCCTTTGTCACCATTTACGCGTTGTCGGTGACCCTGGGGAGTATGATATGGTCATTGGGGCCATTCAGCAAAGGAGGTGTAATTGGAACCAGGTGCTGATGATGCAGCAATACTTTTCTGTGGCTGATGTGGCGCATGCGCTGCAGCAAGTGGCGTGGAGGAGGCAGCAGAGGCCTCTGGATCCAGTGAAAGTGGGTGCAAAGGAATTTAGGAAATCCGGTTCGGGATACCGGCATGGGCAGAGGTTTGAGCCTGTAAAGGAAGGTTATAATTCTAGTGTAGAGTCTTATAATCAATATGATGCAAATGTCACGGTTACTGGAGGCACGGAGAAAGGGACTCCAGTTGTTGAGAAGAGTGAAGAACATAAATCTGGTGGAAAGGTTGAGAAAGTGGGGGATAAGGGTTTAGCATCTGCTGAAGACAAGAAAGGGGACGATTCACATTCTGTGCAAAATCAACATCAGAGCCAAAGTCTTTCTACCAAAGCAAAAACTTTTATTGGCAATGAAATGTTTGATGGGAAGATGGTGAATGTGGTTGATGGACTGAAGTTGTATGAAGATTTATTTGATAGCACTGAAATTGCAAATCTTGTTTCATTGGTCAATGATCTAAGGGTTTCTGGAAAAAAAGGACAGTTACAAGGAAGTCAGGCATATATAGTTTCAAGAAGGCCCATGAAAGGGCATGGAAGGGAGATGATTCAGTTGGGTGTTCCAATTGCTGATGCCCCAGCAGAAGGGGAAAATATGACAGGAGCCTCCAAAGATATGAATGTAGAACCTATTCCTTCCTTGTTTCAAGATATTATTGAGCGTATGGTTTCCTCGCAAGTAATGACTGTGAAGCCTGATTGTTGCATTGTGGATTTCTATAATGAGGGTGATCACTCACAACCCCACAGTTGGCCATCATGGTATGGAAGGCCTGTTTATATCCTTTTTCTGACTGAATGTGAAATGACTTTTGGAAGAGTAATTGCCTCAGAGCATCCTGGGGATTATAGGGGTGGTATCAAGCTTTCTCTAGTTCCTGGGTCCCTTCTGGTTATGGAAGGTAAATCCAGTGATTTTGCTAAGCATGCTCTTCCTTCCGTACGCAAACAACGCATACTTGTTACCTTCACAAAGTCCCAACCAAGAAAGTCACTATCAAGTGATGCTCAACGGCTTGCCTCGACAGCAACATCTTCTCATTGGGGTCCATTGCCAAGCCGATCCCCCAATCATGTCCGTCATCACGTAGGCTCCAAGCATTATGCTACACTTCCAACAACTGGAGTACTGCCATCTCCACCCATTCGACCACAAATGGCAGCTCCAGTTGGCATGCAACCATTGTTTGTTACTGCGCCAGTTGTACCTCCCATGCCATTTCCTGCACCTGTGGCATTCCCACCCGGTTCTACTGGATGGACAGGAGCACCTCCTCCAAGGCATCCCCCTCCTCGAGTCCCTGCTCCTGGGACAGGAGTCTTCCTACCTCCGCCGGGCTCAGGTAATTCATCTCAACAGTTACCAGCGGGTACTTTGGCTGAAGTGAACCCAAGCACGGAAACTCCAACCATGCTGGAGAAGGAAAATGGGAAAACTAATCATAATAGTACAAGTGCTTCACCAAAAGGAAAAGTGCAAAAGCAAGAATGCAATGGGCATGCGGCTGATGGAACTCAAGTTGAACCAGCTCTAGAGACACGGCAAGATAGCAATGACAAAGCTGCACCATGTCATTGAGCTGTACCATAATTACAGAGATAAAGAGAGAAAAGAGAGGAAAAGCTTATCACACGAACACGATAGGCGGTGAACTTGACTTGAGTTTGAAGCAAATGTAAAGCGCGGCAACACGAGATATCACTATACTGCAGGGGAGAACAAGGGAAGGAGGTAGAACTTTTGGTTCTCTCTGTATTCCTTTCTTTGCTCCATTCCTTTTTTGTTGTCTTAAAATATTAACTGTTACAGCAAGGGAAACCCATTCTTAATTCTAATTTTGGCCTTTCCTATCTTAATTATTTTATTTTAATGCTTCTTACTGTTAATATTGATCTTGTGGTAGTGTGTGCGTGTTTCAACTGGATTTGTTAAAACTTAAAACTAGTTTAAGGCATACAAAATGGCATGTTGAGACGGAATCAAATAGAAGTTGGCAACATATCCCATTTGAAGCTTGTCAATTAAATAATTAACAATACCGATACAACACCACTTTAGAAACT

Coding sequences of Glyma05g26950

Limit To All Plant Sequences

>Glyma05g26950.2   sequence type=CDS   gene model=Glyma05g26950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGCCATCGGGAAATGTGGTAATACAGGACAAAATGCAGTTTCCAAGTGGCGGTGCCGGTGCCGGTGGTGCTGGCGGAGAGATCCACCAGCCCCACTACTGCCAGCAATGGTTTGTTGATGAGAGGGATGGGCTTATTGGCTGGCTGCGAAGCGAATTTGCAGCTGCCAATGCCATCATAGACTCCCTTTGTCACCATTTACGCGTTGTCGGTGACCCTGGGGAGTATGATATGGTCATTGGGGCCATTCAGCAAAGGAGGTGTAATTGGAACCAGGTGCTGATGATGCAGCAATACTTTTCTGTGGCTGATGTGGCGCATGCGCTGCAGCAAGTGGCGTGGAGGAGGCAGCAGAGGCCTCTGGATCCAGTGAAAGTGGGTGCAAAGGAATTTAGGAAATCCGGTTCGGGATACCGGCATGGGCAGAGGTTTGAGCCTGTAAAGGAAGGTTATAATTCTAGTGTAGAGTCTTATAATCAATATGATGCAAATGTCACGGTTACTGGAGGCACGGAGAAAGGGACTCCAGTTGTTGAGAAGAGTGAAGAACATAAATCTGGTGGAAAGGTTGAGAAAGTGGGGGATAAGGGTTTAGCATCTGCTGAAGACAAGAAAGATGCTATAACAAAGCATCAAACTGATGGCAGCTTGAAGAGCACAAGGAGTACTGAAGGATCTTTGTCCAACTTAGAATCTGAAGCTGTTGTAAATGATGAATGTATATCTAATTCTAAAGGGGACGATTCACATTCTGTGCAAAATCAACATCAGAGCCAAAGTCTTTCTACCAAAGCAAAAACTTTTATTGGCAATGAAATGTTTGATGGGAAGATGGTGAATGTGGTTGATGGACTGAAGTTGTATGAAGATTTATTTGATAGCACTGAAATTGCAAATCTTGTTTCATTGGTCAATGATCTAAGGGTTTCTGGAAAAAAAGGACAGTTACAAGGAAGTCAGGCATATATAGTTTCAAGAAGGCCCATGAAAGGGCATGGAAGGGAGATGATTCAGTTGGGTGTTCCAATTGCTGATGCCCCAGCAGAAGGGGAAAATATGACAGGAGCCTCCAAAGATATGAATGTAGAACCTATTCCTTCCTTGTTTCAAGATATTATTGAGCGTATGGTTTCCTCGCAAGTAATGACTGTGAAGCCTGATTGTTGCATTGTGGATTTCTATAATGAGGGTGATCACTCACAACCCCACAGTTGGCCATCATGGTATGGAAGGCCTGTTTATATCCTTTTTCTGACTGAATGTGAAATGACTTTTGGAAGAGTAATTGCCTCAGAGCATCCTGGGGATTATAGGGGTGGTATCAAGCTTTCTCTAGTTCCTGGGTCCCTTCTGGTTATGGAAGGTAAATCCAGTGATTTTGCTAAGCATGCTCTTCCTTCCGTACGCAAACAACGCATACTTGTTACCTTCACAAAGTCCCAACCAAGAAAGTCACTATCAAGTGATGCTCAACGGCTTGCCTCGACAGCAACATCTTCTCATTGGGGTCCATTGCCAAGCCGATCCCCCAATCATGTCCGTCATCACGTAGGCTCCAAGCATTATGCTACACTTCCAACAACTGGAGTACTGCCATCTCCACCCATTCGACCACAAATGGCAGCTCCAGTTGGCATGCAACCATTGTTTGTTACTGCGCCAGTTGTACCTCCCATGCCATTTCCTGCACCTGTGGCATTCCCACCCGGTTCTACTGGATGGACAGGAGCACCTCCTCCAAGGCATCCCCCTCCTCGAGTCCCTGCTCCTGGGACAGGAGTCTTCCTACCTCCGCCGGGCTCAGGTAATTCATCTCAACAGTTACCAGCGGGTACTTTGGCTGAAGTGAACCCAAGCACGGAAACTCCAACCATGCTGGAGAAGGAAAATGGGAAAACTAATCATAATAGTACAAGTGCTTCACCAAAAGGAAAAGTGCAAAAGCAAGAATGCAATGGGCATGCGGCTGATGGAACTCAAGTTGAACCAGCTCTAGAGACACGGCAAGATAGCAATGACAAAGCTGCACCATGTCATTGA

>Glyma05g26950.3   sequence type=CDS   gene model=Glyma05g26950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGCCATCGGGAAATGTGGTAATACAGGACAAAATGCAGTTTCCAAGTGGCGGTGCCGGTGCCGGTGGTGCTGGCGGAGAGATCCACCAGCCCCACTACTGCCAGCAATGGTTTGTTGATGAGAGGGATGGGCTTATTGGCTGGCTGCGAAGCGAATTTGCAGCTGCCAATGCCATCATAGACTCCCTTTGTCACCATTTACGCGTTGTCGGTGACCCTGGGGAGTATGATATGGTCATTGGGGCCATTCAGCAAAGGAGGTGTAATTGGAACCAGGTGCTGATGATGCAGCAATACTTTTCTGTGGCTGATGTGGCGCATGCGCTGCAGCAAGTGGCGTGGAGGAGGCAGCAGAGGCCTCTGGATCCAGTGAAAGTGGGTGCAAAGGAATTTAGGAAATCCGGTTCGGGATACCGGCATGGGCAGAGGTTTGAGCCTGTAAAGGAAGGTTATAATTCTAGTGTAGAGTCTTATAATCAATATGATGCAAATGTCACGGTTACTGGAGGCACGGAGAAAGGGACTCCAGTTGTTGAGAAGAGTGAAGAACATAAATCTGGTGGAAAGGTTGAGAAAGTGGGGGATAAGGGTTTAGCATCTGCTGAAGACAAGAAAGGGGACGATTCACATTCTGTGCAAAATCAACATCAGAGCCAAAGTCTTTCTACCAAAGCAAAAACTTTTATTGGCAATGAAATGTTTGATGGGAAGATGGTGAATGTGGTTGATGGACTGAAGTTGTATGAAGATTTATTTGATAGCACTGAAATTGCAAATCTTGTTTCATTGGTCAATGATCTAAGGGTTTCTGGAAAAAAAGGACAGTTACAAGGAAGTCAGGCATATATAGTTTCAAGAAGGCCCATGAAAGGGCATGGAAGGGAGATGATTCAGTTGGGTGTTCCAATTGCTGATGCCCCAGCAGAAGGGGAAAATATGACAGGAGCCTCCAAAGATATGAATGTAGAACCTATTCCTTCCTTGTTTCAAGATATTATTGAGCGTATGGTTTCCTCGCAAGTAATGACTGTGAAGCCTGATTGTTGCATTGTGGATTTCTATAATGAGGGTGATCACTCACAACCCCACAGTTGGCCATCATGGTATGGAAGGCCTGTTTATATCCTTTTTCTGACTGAATGTGAAATGACTTTTGGAAGAGTAATTGCCTCAGAGCATCCTGGGGATTATAGGGGTGGTATCAAGCTTTCTCTAGTTCCTGGGTCCCTTCTGGTTATGGAAGGTAAATCCAGTGATTTTGCTAAGCATGCTCTTCCTTCCGTACGCAAACAACGCATACTTGTTACCTTCACAAAGTCCCAACCAAGAAAGTCACTATCAAGTGATGCTCAACGGCTTGCCTCGACAGCAACATCTTCTCATTGGGGTCCATTGCCAAGCCGATCCCCCAATCATGTCCGTCATCACGTAGGCTCCAAGCATTATGCTACACTTCCAACAACTGGAGTACTGCCATCTCCACCCATTCGACCACAAATGGCAGCTCCAGTTGGCATGCAACCATTGTTTGTTACTGCGCCAGTTGTACCTCCCATGCCATTTCCTGCACCTGTGGCATTCCCACCCGGTTCTACTGGATGGACAGGAGCACCTCCTCCAAGGCATCCCCCTCCTCGAGTCCCTGCTCCTGGGACAGGAGTCTTCCTACCTCCGCCGGGCTCAGGTAATTCATCTCAACAGTTACCAGCGGGTACTTTGGCTGAAGTGAACCCAAGCACGGAAACTCCAACCATGCTGGAGAAGGAAAATGGGAAAACTAATCATAATAGTACAAGTGCTTCACCAAAAGGAAAAGTGCAAAAGCAAGAATGCAATGGGCATGCGGCTGATGGAACTCAAGTTGAACCAGCTCTAGAGACACGGCAAGATAGCAATGACAAAGCTGCACCATGTCATTGA

Predicted protein sequences of Glyma05g26950

Limit To All Plant Sequences

>Glyma05g26950.2   sequence type=predicted peptide   gene model=Glyma05g26950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMPSGNVVIQDKMQFPSGGAGAGGAGGEIHQPHYCQQWFVDERDGLIGWLRSEFAAANAIIDSLCHHLRVVGDPGEYDMVIGAIQQRRCNWNQVLMMQQYFSVADVAHALQQVAWRRQQRPLDPVKVGAKEFRKSGSGYRHGQRFEPVKEGYNSSVESYNQYDANVTVTGGTEKGTPVVEKSEEHKSGGKVEKVGDKGLASAEDKKDAITKHQTDGSLKSTRSTEGSLSNLESEAVVNDECISNSKGDDSHSVQNQHQSQSLSTKAKTFIGNEMFDGKMVNVVDGLKLYEDLFDSTEIANLVSLVNDLRVSGKKGQLQGSQAYIVSRRPMKGHGREMIQLGVPIADAPAEGENMTGASKDMNVEPIPSLFQDIIERMVSSQVMTVKPDCCIVDFYNEGDHSQPHSWPSWYGRPVYILFLTECEMTFGRVIASEHPGDYRGGIKLSLVPGSLLVMEGKSSDFAKHALPSVRKQRILVTFTKSQPRKSLSSDAQRLASTATSSHWGPLPSRSPNHVRHHVGSKHYATLPTTGVLPSPPIRPQMAAPVGMQPLFVTAPVVPPMPFPAPVAFPPGSTGWTGAPPPRHPPPRVPAPGTGVFLPPPGSGNSSQQLPAGTLAEVNPSTETPTMLEKENGKTNHNSTSASPKGKVQKQECNGHAADGTQVEPALETRQDSNDKAAPCH*

>Glyma05g26950.3   sequence type=predicted peptide   gene model=Glyma05g26950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMPSGNVVIQDKMQFPSGGAGAGGAGGEIHQPHYCQQWFVDERDGLIGWLRSEFAAANAIIDSLCHHLRVVGDPGEYDMVIGAIQQRRCNWNQVLMMQQYFSVADVAHALQQVAWRRQQRPLDPVKVGAKEFRKSGSGYRHGQRFEPVKEGYNSSVESYNQYDANVTVTGGTEKGTPVVEKSEEHKSGGKVEKVGDKGLASAEDKKGDDSHSVQNQHQSQSLSTKAKTFIGNEMFDGKMVNVVDGLKLYEDLFDSTEIANLVSLVNDLRVSGKKGQLQGSQAYIVSRRPMKGHGREMIQLGVPIADAPAEGENMTGASKDMNVEPIPSLFQDIIERMVSSQVMTVKPDCCIVDFYNEGDHSQPHSWPSWYGRPVYILFLTECEMTFGRVIASEHPGDYRGGIKLSLVPGSLLVMEGKSSDFAKHALPSVRKQRILVTFTKSQPRKSLSSDAQRLASTATSSHWGPLPSRSPNHVRHHVGSKHYATLPTTGVLPSPPIRPQMAAPVGMQPLFVTAPVVPPMPFPAPVAFPPGSTGWTGAPPPRHPPPRVPAPGTGVFLPPPGSGNSSQQLPAGTLAEVNPSTETPTMLEKENGKTNHNSTSASPKGKVQKQECNGHAADGTQVEPALETRQDSNDKAAPCH*

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