SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68080 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:25517530-25519240 FORWARD LENGTH=389 | SoyBase | E_val: 7.00E-121 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0031418 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-ascorbic acid binding | SoyBase | N/A | ISS |
| PTHR14049 | Panther | LEPRECAN 1 | JGI | ISS | |
| PTHR14049:SF7 | Panther | OXIDOREDUCTASE, ACTING ON PAIRED DONORS, WITH INCO | JGI | ISS | |
| UniRef100_B9SNI2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase, putative n=1 Tax=Ricinus communis RepID=B9SNI2_RICCO | SoyBase | E_val: 2.00E-127 | ISS |
| UniRef100_I1K3C7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3C7_SOYBN | SoyBase | E_val: 7.00E-179 | ISS |
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Glyma05g26940 not represented in the dataset |
Glyma05g26940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g09920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g26940.1 sequence type=CDS gene model=Glyma05g26940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGAGGTTGAGTTTGAACCTCAATCACCACGCCTCTTCATCCCCAACTTCCTCTCCCTCAACGAATGCAGAGAATTGGAATTCATCCACAAGAGTAGCAGCACGGTGGGTTACAGACCCATTGTCTTCTCCACCACTCTCTCCCATCTCATTGCTACCAATTCTTCCCACTTCATCATTCCTTTTATACCCATCAGAGAACGGTTGAAAGACAAGCTAGAGGAGTTTTTCAAGTGTGAGTATGAGCTCTTCATTGAATTCACTGGTTTAATAAGTTGGAGCAGAGGAGCAAGCATTGGATGGCATAGTGATGATAACAGGCCCTACCTCAAACAACGTCACTTCTCAGAAGTATGCTATTTGAACACTTATGGCCCGGATTTCAGTGGTGGACTCTTTCACTTCCAGGATGGTGAGCCCAAGTCAATTGTGCCAAAAGCCGATGTTCTGATGTACACAGCTGATGACCATAACATTCATTCTGTTGATGAGATAACTGAAGGAGAAAGGCTCACACTTGCTTTATGGTTCAGTCGTGATGGCTCCCATGATGAGGATATGAAGCTCATTTCTCTTCTTTCACGACACCTGTTGCATGACAACATGGCTGATTCATACTTACCTTTGCCAGCATCCAGTAATATGTACTGTTCGGTTTTAATATCATGCTGGGCTAGACTGCATGTTCTTGGATACGACATATATATTTCTCAAGACAGTAGCTGTGAGTCCGATGTCTCTGAATCACTGTTAAAGCCAGTGCGCTTAGTGAGGGAGAATGAGTTGCTAGACCAGGAATTTGTCAATATTATGCATGCACTTCAGGTATTTTGTTAA
>Glyma05g26940.1 sequence type=predicted peptide gene model=Glyma05g26940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEVEFEPQSPRLFIPNFLSLNECRELEFIHKSSSTVGYRPIVFSTTLSHLIATNSSHFIIPFIPIRERLKDKLEEFFKCEYELFIEFTGLISWSRGASIGWHSDDNRPYLKQRHFSEVCYLNTYGPDFSGGLFHFQDGEPKSIVPKADVLMYTADDHNIHSVDEITEGERLTLALWFSRDGSHDEDMKLISLLSRHLLHDNMADSYLPLPASSNMYCSVLISCWARLHVLGYDIYISQDSSCESDVSESLLKPVRLVRENELLDQEFVNIMHALQVFC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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