Glyma05g26930 - SoyBase

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Report for Sequence Feature Glyma05g26930

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32812624
stop:	32818099
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01890	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 8 \| chr2:396985-399168 REVERSE LENGTH=335	SoyBase	E_val: 2.00E-147	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2679	KOG	Purple (tartrate-resistant) acid phosphatase	JGI		ISS
PTHR10161	Panther	ACID PHOSPHATASE-RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_C6TKR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKR1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D2D4J4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatase 3 n=1 Tax=Phaseolus vulgaris RepID=D2D4J4_PHAVU	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g26930

Locus	Gene Symbol	Protein Name
	PAP8	Purple acid phosphatase 8 gene
	PAP8	Purple acid phosphatase gene 8

Expression Patterns of Glyma05g26930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26930

Paralog	Evidence	Comments
Glyma08g09910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g138400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26930

Limit To All Plant Sequences

>Glyma05g26930.2   sequence type=transcript   gene model=Glyma05g26930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAACTTACAAGTGACAGAATAATATATGGTCATTTCTCTAAGATCTTATTAAGAAATTGAGACGCTAATGTACTCCATCTTACATTTACATTCTTCTACATTATTCACAAAAGAAAATCTATTATTTCCTCACATTTAGATGTGGCAGCTCCTGCTTTGTATCATGTTTAAGCTCGAGGGTTTAACATTGAACGGTTAATAGCGCATTTGACTCCAAAAATGTTGTATGCACATCTACTATAAAATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAATCATTCGTCGACATGTACACTGCCCCAAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGTGATGTTGGGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACCACTCCATTTGTAGAAGAGTACTTCACGGACCCAGGAGAGCATACCTATGACTGGGAAGGCGTTCTTCCTCGCCTAGCTTACCTTTCAGAACTCTTGAAGGATGTTGATTTAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAACAGTGCTGGGCATCATGGTAACACCGAAGAGCTTAAACAGCTACTTGTTCCCATCTTAGAGGCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAGTGGAATTCACTTTATAACAAGTGGAGGTGGATCAAAGGCATGGTCGGGCGATGTCAAGCCATGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCAAAGCAGATATCATATTTTATGATGCCTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAATAAGCTAAAGTACACACATTACCGGCTCTATGTTATGAAAATGGAGGTCCCTCTGGCTGACAATTAGGGCAACTTAAAAATGTACTATTTGTAACAAAGAAAAGAAGAAAAAAGAACGTTTAGAGAAATTCTAATGTCCTTGCAGTAGCTGTAGTATGCACCCTAACTCGTGCTATAGAAGTTTCAGAAACAAAGGCATACACTACTTTGTAGTATTTGTAAGTACTTCTGTAAGTGATCATTGAGCCTTGAGGCTTGCCCTGACCCTGGTGAGCCCTTGGGACCCAATCACATAAACTTTTCATTATCAAAAAAAAAAAAATGATGGATGGTCTGATTGTTCTACACATAACACATTGATAGTTTTCATCAATCAAATCTACTAAACTTATAATTATCTCTTTGTTCTCATGAATC

Coding sequences of Glyma05g26930

Limit To All Plant Sequences

>Glyma05g26930.1   sequence type=CDS   gene model=Glyma05g26930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATCTTTAAACCAACGCATGTTATTCCCTCTTATGTTCGTAATTGGTATGTTCTGCTTAATGGTAACTCCTTCTATTGCGGAACTTCCCATATTCAAACACCCTCCAAAAAAACAACAATCTCTTAATATATTGGTCCTTGGAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAATCATTCGTCGACATGTACACTGCCCCAAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGTGATGTTGGGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACCACTCCATTTGTAGAAGAGTACTTCACGGACCCAGGAGAGCATACCTATGACTGGGAAGGCGTTCTTCCTCGCCTAGCTTACCTTTCAGAACTCTTGAAGGATGTTGATTTAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAACAGTGCTGGGCATCATGGTAACACCGAAGAGCTTAAACAGCTACTTGTTCCCATCTTAGAGGCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAGTGGAATTCACTTTATAACAAGTGGAGGTGGATCAAAGGCATGGTCGGGCGATGTCAAGCCATGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCAAAGCAGATATCATATTTTATGATGCCTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAA

>Glyma05g26930.2   sequence type=CDS   gene model=Glyma05g26930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACATCTACTATAAAATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCTACCAATCATTCGTCGACATGTACACTGCCCCAAGCTTGCAAAAGACATGGTACACTGTTCTGGGTAACCATGACTACAGAGGTGATGTTGGGGCACAACTAAGTCCAATTCTAAAACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGAAATTGTGGAATTTTTCTTTGTGGACACCACTCCATTTGTAGAAGAGTACTTCACGGACCCAGGAGAGCATACCTATGACTGGGAAGGCGTTCTTCCTCGCCTAGCTTACCTTTCAGAACTCTTGAAGGATGTTGATTTAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAACAGTGCTGGGCATCATGGTAACACCGAAGAGCTTAAACAGCTACTTGTTCCCATCTTAGAGGCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAGTGGAATTCACTTTATAACAAGTGGAGGTGGATCAAAGGCATGGTCGGGCGATGTCAAGCCATGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAAGGATTCATGTCTATGCAGATCACCAAAAGCAAAGCAGATATCATATTTTATGATGCCTTTGGCAAAGTTTTGCATACATGGAGCATATCCAAAGACCGTAACGTAGCAGCCTGGATATAA

Predicted protein sequences of Glyma05g26930

Limit To All Plant Sequences

>Glyma05g26930.1   sequence type=predicted peptide   gene model=Glyma05g26930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLNQRMLFPLMFVIGMFCLMVTPSIAELPIFKHPPKKQQSLNILVLGDWGRKGTYNQSLVANQMGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFVDMYTAPSLQKTWYTVLGNHDYRGDVGAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVLPRLAYLSELLKDVDLALAQSKAKWKMVVGHHTINSAGHHGNTEELKQLLVPILEANDVDAYINGHDHCLQHIIDNNSGIHFITSGGGSKAWSGDVKPWKLEELKLYYDGQGFMSMQITKSKADIIFYDAFGKVLHTWSISKDRNVAAWI*

>Glyma05g26930.2   sequence type=predicted peptide   gene model=Glyma05g26930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHIYYKMGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFVDMYTAPSLQKTWYTVLGNHDYRGDVGAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVLPRLAYLSELLKDVDLALAQSKAKWKMVVGHHTINSAGHHGNTEELKQLLVPILEANDVDAYINGHDHCLQHIIDNNSGIHFITSGGGSKAWSGDVKPWKLEELKLYYDGQGFMSMQITKSKADIIFYDAFGKVLHTWSISKDRNVAAWI*

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